DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and dlgap2a

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_021323093.1 Gene:dlgap2a / 557621 ZFINID:ZDB-GENE-101215-1 Length:1224 Species:Danio rerio


Alignment Length:657 Identity:124/657 - (18%)
Similarity:200/657 - (30%) Gaps:291/657 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DRSLDSIGSCS----LDVDADSSDISD-TSGSLNFPTPVSVRDITREFTANLRERCVPNL----- 56
            ||::..:.:.|    .|.:::.:||.| |..:|..|.||.|..:           |.|:|     
Zfish   758 DRNVLQVSTSSPFFQTDPNSELADIDDPTFANLTPPDPVDVTSL-----------CWPDLDSDSM 811

  Fly    57 ----PPQPQHKTPAYVESRSSELEH---MVLSPAIVE-----------CDQEPSSNDFDETSAEN 103
                ||:|..:..:|..::||..||   :||....||           .|.|.:.:...|:..:.
Zfish   812 TPPDPPEPVPEVESYCFTKSSTPEHVESIVLDFTNVELVNLASLQWPKLDPEDTGSSLHESLDQP 876

  Fly   104 SQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDIN-------------------KSREVSPIRP 149
            |..:||:      |..|.......||.:..:.:.:.                   ....:||:..
Zfish   877 SPGSPEE------LGPCTPELVITTTQERSVLESMQPLLLSHLDEEQIDFTLPELDPSVLSPLTL 935

  Fly   150 STSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSFIKQRVER 214
            .:.:|      |.|..|:|.|:                            ..|.:||        
Zfish   936 DSMNL------HDLKWPSLESL----------------------------ELNVSGS-------- 958

  Fly   215 LYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKFKQLSPSKDYGEFRKKMQK 279
             ..||.|.....:|.                                   :|...|         
Zfish   959 -QSPGPLDLALPNPP-----------------------------------TPETVY--------- 978

  Fly   280 KCSQSTTARIDEPLHSPGLNGDLDLPVFRHLSQEFRAQLPTV--SPKRGAPRSCMAPDVLLVDNE 342
            .||..:||: :.||  |.|                   |.|:  .|....|.|....|   :.|.
Zfish   979 TCSFESTAQ-EPPL--PEL-------------------LDTIYLQPATPEPESRTDSD---ISNP 1018

  Fly   343 SSPD-HGPTDEVDHESTKMDKLASEEYISTSNISVEAVV---KDGNFFLKILKEEQSRLLVLAAL 403
            :||: |.||.:..               ||..:..:|:|   |...|.  |.:||..        
Zfish  1019 ASPEPHFPTCQKS---------------STHELDSQALVLWSKKDTFM--IFREEDG-------- 1058

  Fly   404 AEKYADALSTNPD----ISEDTF------------GLLRSASGKARLLVSQKMKQFEGLCHNNLN 452
                |::.|...|    .|.||.            |.|.|.:..:.:|.|.:...|:        
Zfish  1059 ----AESCSEEKDGQNVASSDTMINFAVQSDAVDSGPLESETLFSAVLCSIESDTFD-------- 1111

  Fly   453 RSPEDKFPTTLDD--LQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQSVADQPDLHTIPTKT 515
              ||   .|::|:  .||                                  ::.|.|.||...|
Zfish  1112 --PE---VTSMDEPTTQG----------------------------------SNPPGLATIDPAT 1137

  Fly   516 IKPSKVGVSQVKT---VGKASSVRVNGSAPPPPNSAAALKREA---QRKLLLEMKRQR----REA 570
            :.|..:.:.::::   |.| |....|||    |...||:...:   .|:..|.::.||    |:.
Zfish  1138 VHPFNLSLLELQSALDVSK-SETSDNGS----PKGTAAISSPSYSPSRRDFLWIRWQRKTRGRQP 1197

  Fly   571 MTAAAKL 577
            |:.:|.:
Zfish  1198 MSRSASM 1204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 70/362 (19%)
dlgap2aXP_021323093.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 92 1.000 Domainoid score I7559
eggNOG 1 0.900 - - E1_KOG3971
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000823
OrthoInspector 1 1.000 - - otm25339
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12353
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3941
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.990

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