DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and dlgap5

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001004592.1 Gene:dlgap5 / 447853 ZFINID:ZDB-GENE-040912-160 Length:909 Species:Danio rerio


Alignment Length:656 Identity:146/656 - (22%)
Similarity:245/656 - (37%) Gaps:183/656 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 REFTANLRERCVPNLPPQPQHKTPAYVESRSSELE-HMVLSPAIVECDQEPSSNDFDETSAENSQ 105
            ||...|:| |.:..||                |:: .|..|..:...|:.|.:    :|::::|.
Zfish    34 REKIQNMR-RHLDRLP----------------EIDLSMDTSTLMATQDKAPKT----KTASDSSD 77

  Fly   106 EAPEKKPSYLNLACCVNGYSNLTTY-DSKIRQDINKSRE------------------------VS 145
            .|.|:|             ..|..| ::||.|...:.||                        .:
Zfish    78 AAEERK-------------KMLARYKENKILQKEKEKREKEKKGVFKVGLYKPQPLGYLPSNTAA 129

  Fly   146 PIRPSTSSLQYCKR-------NHFLATPTLHSMPSP----ATKCKPIEPNN---NSNDSSGNFSS 196
            |.|...:.:....|       |..||... |::|..    :|...|.:.|.   .|..:....:.
Zfish   130 PGRAKATEMNQSTRMTRSMVQNQKLAVER-HAVPKKVECLSTARAPAKENRKPLTSTKTRATTAE 193

  Fly   197 GSGHSNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKF 261
            ....:....|..|...:.:..|.|..:|   ||........||..|.||:|    :||:..|...
Zfish   194 PPVRAQTTRSAAKTAPDAVVKPVADTRG---PKTRSAVKYPAAPSSGRGKV----VQGNMKANVE 251

  Fly   262 KQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSP--------------GLNGDLDLPVF----- 307
            .:.:..||              :...:::||..:|              ||.....:|:.     
Zfish   252 NKPAEIKD--------------TAVDKVEEPKAAPASFAPQGFVFQPPVGLRSFEPVPLSPSSAN 302

  Fly   308 RHLSQEFRAQL------PTVSPKRGAPRSCMAPDVLLVDNESSPDH---GPTDEVDHESTKMDKL 363
            ..||..|.:::      |: .||.....|...|.|    :...|||   .|:.....::....:.
Zfish   303 AFLSPSFNSEVSMEPAFPS-PPKPVVSFSSPPPSV----SAHMPDHPISPPSVSSPLQAQSFPQP 362

  Fly   364 ASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVLAALAEKYADALSTNPDISEDTFGLLRSA 428
            :::...|.|:.|:|. ..|..:|...:..|..||..|:.|.|...|..|    |.|:....:|:|
Zfish   363 STDAAPSPSSASMEP-QHDVAYFRAAMASETERLTGLSELWESRFDDAS----IPEEMRDRMRTA 422

  Fly   429 SGKARLLVSQKMKQFEGLCHN-NLNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKS 492
            .|:||||:.::..||.||..: :..|.  :|. ||..||||||||||.|||.|:..|:.:::.::
Zfish   423 VGQARLLMKERFGQFNGLVDDCDFKRG--EKI-TTCTDLQGFWDMVYFQVEDVNKKFSALKEAEA 484

  Fly   493 NDWKVKAQSVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAALKREAQR 557
            .|||.:.:.|..:        :.:|...|      ..|||::    |..    .:|||..|.|..
Zfish   485 RDWKEEVKPVTKK--------RVVKKPPV------VAGKAAA----GGG----GNAAAKSRLAAI 527

  Fly   558 KLLLEMKRQRREAM---------TAAAKLNPI----------NVDADPDVPGIIGDSC----ANP 599
            |..::.|:..::|.         :::..:.|:          .|::....|..:..||    ::|
Zfish   528 KAAMKAKQAEQKATETSDKPQEDSSSVSVAPVQSVVFHGGFFQVESPVKTPAAVRRSCRGVVSSP 592

  Fly   600 SVSNGS 605
            ||:..|
Zfish   593 SVTKFS 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 89/366 (24%)
dlgap5NP_001004592.1 GKAP <360..505 CDD:281368 51/160 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3971
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12353
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
54.870

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