DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and Dlgap5

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_038949027.1 Gene:Dlgap5 / 289997 RGDID:1311247 Length:840 Species:Rattus norvegicus


Alignment Length:600 Identity:139/600 - (23%)
Similarity:221/600 - (36%) Gaps:152/600 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RDITREFTANLRERCVP--------NLPPQPQHKTPAYVE--SRSSELEHMVLSPAIVECDQEPS 92
            |:..:.|...|.....|        .:..:||...| |..  :||...:||..|        :..
  Rat   109 REKAKVFKVGLYRPAAPGFLVADQRGVKAEPQKAFP-YTGRITRSKARDHMEQS--------KTG 164

  Fly    93 SNDFDETSAENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREV-SPIRPSTSSLQY 156
            |.:..:.:....::..||||                         :::.::| .|:.|::..   
  Rat   165 SRNIPQAAQFGQRQISEKKP-------------------------LDREKKVMQPMGPTSGK--- 201

  Fly   157 CKRNHFLATPTLHSMPS--PATKCKPIEPNNNSNDSSGNFSSGSGHSNGN-GSFIKQRVERLYGP 218
             ......||.....|..  |:|..||:....|.|.|...     |.|.|. ....:..::::...
  Rat   202 -AAGSVAATQRAKQMAGTVPSTTRKPVTRATNENGSERR-----GPSRGRPAGKAEGELDKIISS 260

  Fly   219 GALAQGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQ 283
            ..:|.|  |.:||.||.|:...       |::|||.:..|:..::.|.:.:...|:.....|..|
  Rat   261 QGIALG--SEEKHLQSQSSVTN-------EVESLQETVPAKGRERESFAPERCAFQPPRGLKTYQ 316

  Fly   284 STTARIDEPLHSPGLNGDLDLPV-FRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDH 347
            ..      ||.....|..|.... :.||..|......|            |.:||:....:....
  Rat   317 VA------PLSPRSANAFLTPSCDWNHLRPEVATAQDT------------ANEVLVQQESNKSQF 363

  Fly   348 GPTDEVDHESTKMDKLASEEYISTSN---ISVEAVVK----DGN---------FFLKILKEEQSR 396
            |...:.|   ::.::..:::..||.|   :||:.:..    ||.         :|.|||:.|..|
  Rat   364 GLDSQTD---SRKERGLNQKDASTPNSDHLSVKGITSSEAGDGQTGQPQHDVPYFRKILQSETDR 425

  Fly   397 LLVLAALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPT 461
            |.......||..:.     ||.:|...|:|:|.|:.|||:.::.:|||||..|...:..|.:  |
  Rat   426 LNSHCLDWEKKLEL-----DIPDDAKDLIRTAVGQTRLLIMERFRQFEGLVDNCEYKRGEKE--T 483

  Fly   462 TLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQSVADQPDLHTIPTKTIK--PSKVGVS 524
            |..||.||||||..||:.|...|.::.||:.:.||          |.:....|.|:  |:..|..
  Rat   484 TCTDLDGFWDMVSFQVDDVTQKFNNLMKLEESGWK----------DNNNPSKKVIRGLPTPAGPH 538

  Fly   525 QVKTVGKASSVRVNGSAPPP-----PNSAAALK-----REAQRKLLLEMK-----RQRREAMTAA 574
            ..     ..:|.:.|..|.|     |...:..|     |.|.|..|..:|     |.|:||...|
  Rat   539 LF-----CQTVLLTGDQPSPHKKIVPGKTSKAKQDEDGRTAARSRLAAIKNAMKDRLRQEAQAQA 598

  Fly   575 AKLNPINVDADPDVP 589
            |.         |::|
  Rat   599 AV---------PEIP 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 93/362 (26%)
Dlgap5XP_038949027.1 GKAP <411..589 CDD:397439 60/199 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12353
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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