DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and Dlgap4

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_775168.2 Gene:Dlgap4 / 286930 RGDID:708350 Length:992 Species:Rattus norvegicus


Alignment Length:674 Identity:158/674 - (23%)
Similarity:243/674 - (36%) Gaps:199/674 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RSLDSIGSCSLDV-------DADSSDISDT---SGSLN------------FPTPVSVR--DITRE 43
            ||||.:.|..:.:       :.|.:.|||:   ||.::            |.....||  |::.:
  Rat   414 RSLDRLDSVDMPLPSKYPSWEEDYNPISDSLNDSGCISQVFGQASLIPQLFGHDQQVREADLSDQ 478

  Fly    44 FTANLRERCVPNLPPQPQHKT---------PAYVESRSSELEHMVLSPAIVECDQEPSSNDFDET 99
            :.|.....|      .....|         |:|..|||    |..|......|.||..|......
  Rat   479 YEAACESAC------SEAESTAAEALDLSLPSYFRSRS----HSYLRAIQAGCSQEEDSVSLQSL 533

  Fly   100 -------SAENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPSTSSLQYC 157
                   |..||:..|.        :.|:..|                .:...|:.|.|:|..: 
  Rat   534 SPPPSTGSLSNSRTLPS--------SSCLVAY----------------KKTPPPVPPRTTSKPF- 573

  Fly   158 KRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSFIKQRVERLYGPGALA 222
                  .:.|:.|....|.     :...:|.|.....:|.||.||.:.|     ::....|.::.
  Rat   574 ------ISVTVQSSTESAQ-----DTYLDSQDHKSEVTSQSGLSNSSDS-----LDSSTRPPSVT 622

  Fly   223 QGFYSPKKHGQS--PSNAAGRSERGQVEIDSLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQST 285
            :|..:|......  |.:||.:||.|.: ..|...||...|.|..|..         :|..|.|..
  Rat   623 RGGITPGPEAPEPPPKHAALKSEHGTL-TSSESHSEAVPKRKLSSIG---------IQVDCIQPV 677

  Fly   286 TARIDEP---LHSPGLNGDLDLPVFRHLSQEFRAQLP--TVSPKRGA--------PRSCMAPDVL 337
            ......|   ..|.|:          .:..::|:..|  ::|.:|..        ..||.:.:..
  Rat   678 PKEEPSPATKFQSIGV----------QVEDDWRSSAPSHSMSSRRDTDSDTQDANDSSCKSSERS 732

  Fly   338 LVDNESSPDHGPTDEVDHESTKMDKL---------------AS-----EEYISTSNISVE----- 377
            |.|..|.|:....|....::.|:.::               ||     :.::.||:.|..     
  Rat   733 LPDCTSHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALEASSLPPPDPWLETSSSSPAEPAQP 797

  Fly   378 -AVVKDGNFFLKILKEEQSRLLVLAALAEKYA---DALSTNPDISEDTFGLLRSASGKARLLVSQ 438
             |..:||.:|||:|:.|..||       |.:.   |..:...::||:..|.:.||.|.|:||:||
  Rat   798 GACRRDGYWFLKLLQAETERL-------EGWCCQMDKETKENNLSEEVLGKVLSAVGSAQLLMSQ 855

  Fly   439 KMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDW-------K 496
            |.:||.|||..|||  |:.....|..||.||||::.|.:|.:...|.::..||:|.|       |
  Rat   856 KFQQFRGLCEQNLN--PDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEK 918

  Fly   497 VKAQSVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAALKREAQRKLLL 561
            .|.:.....|    :|.|..| ||..||:.|.                 :.|...:|:..||.||
  Rat   919 RKEEKKPPPP----VPKKPAK-SKAAVSRDKA-----------------SDAGDKQRQEARKRLL 961

  Fly   562 EMKRQRREAMTAAAKLNPINVDAD 585
            ..||      .|:.:.|.....||
  Rat   962 AAKR------AASVRQNSATESAD 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 96/377 (25%)
Dlgap4NP_775168.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..226
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 342..435 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 527..665 36/179 (20%)
GKAP 660..992 CDD:397439 96/376 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 677..751 14/83 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 763..798 5/34 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 915..992 23/93 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3971
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000823
OrthoInspector 1 1.000 - - otm45172
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12353
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.960

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