DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and Dlgap3

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_775161.2 Gene:Dlgap3 / 286923 RGDID:708349 Length:977 Species:Rattus norvegicus


Alignment Length:635 Identity:140/635 - (22%)
Similarity:229/635 - (36%) Gaps:198/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DRSLDSI-GSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRERCVPNLPPQPQHKTP 65
            ::.|::: ||...::::.:.|..|..|.....:...:|.|  :...:..:.|:|.|      ..|
  Rat   466 NQQLEAVCGSVFGELESQAVDALDLPGCFRMRSHSYLRAI--QAGCSQDDDCLPLL------AAP 522

  Fly    66 AYVESR-SSELEHMVLSPAIVECDQEP--------SSNDFDETSAENSQEAPEKKPSYLNLACCV 121
            |.|..| .|........|.|....|.|        ||.|    ||..|..|.|......:.|..:
  Rat   523 ASVSGRPGSSFNFRKAPPPIPPGSQAPPRISITAQSSTD----SAHESFTAAEGPARRCSSADGL 583

  Fly   122 NGYSNLTTYDSKIRQDINKSREVSPIRPSTSSLQYCKRNHFLATPT-----------LHSM---- 171
            :|    .|..:       ::.|::|:.|..|.          ..||           |.|:    
  Rat   584 DG----PTMGA-------RTLELAPVPPRASP----------KPPTLIIKTIPGREELRSLARQR 627

  Fly   172 ---PSPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQ 233
               ||...:.:.|..::..|.|...|     ||.|      .:||             ..|:..:
  Rat   628 KWRPSIGVQVETISDSDTENRSRREF-----HSIG------VQVE-------------EDKRRAR 668

  Fly   234 -SPSNAAGRSERGQVEIDSLQG-SELARKFKQLSPSKDYGEFRKKMQKKCSQ------STTARID 290
             ..||:.....:..:|::.|.| :.:|.:.|.|       :|.:..|:..|:      :.|..:.
  Rat   669 FKRSNSVTAGVQADLELEGLAGLATVATEDKAL-------QFGRSFQRHASEPQPGPRAPTYSVF 726

  Fly   291 EPLHS----------------PGLNGDLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLV 339
            ..:|:                |..:|....|           .:|...|..|...|.|..     
  Rat   727 RTVHTQGQWAYREGYPLPYEPPATDGSPGPP-----------PVPAPGPGSGRRDSWMER----- 775

  Fly   340 DNESSPDHGPTDEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVLAALA 404
            .:.|.||.|.|....                          :||.:|:|:|:.|..:|.......
  Rat   776 GSRSLPDSGRTSPCP--------------------------RDGEWFIKMLRAEVEKLEHWCQQM 814

  Fly   405 EKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPT-TLDDLQG 468
            |:.|:    :.::.|:....:|||.|..:||:|||::||..||..:|:.:   .||. |..||.|
  Rat   815 EREAE----DYELPEEILEKIRSAVGSTQLLLSQKVQQFFRLCQQSLDPT---AFPVPTFQDLAG 872

  Fly   469 FWDMVYLQVEHVDSIFADIEKLKSNDWKV---KAQSVADQPDLHTIPTKTIKPSKVGVSQVKTVG 530
            |||::.|.:|.|...|.::::||:|.||:   |.:.....|    ||.   |||:         |
  Rat   873 FWDLLQLSIEDVTLKFLELQQLKANSWKLLEPKEEKKVPPP----IPK---KPSR---------G 921

  Fly   531 KASSVRVNGSAPPPPNSAAALKREAQ--RKLLLEMKRQ---RREAMTAAA 575
            :        ..|....|..::.|:.|  ||.||..||.   |..:.|.:|
  Rat   922 R--------GVPVKERSLDSVDRQRQEARKRLLAAKRAASFRHSSATESA 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 86/360 (24%)
Dlgap3NP_775161.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 52..90
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 137..167
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..289
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..417
PHA03418 515..>607 CDD:177646 27/122 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 529..582 14/56 (25%)
GKAP 626..977 CDD:397439 101/442 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 739..788 13/64 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 906..939 10/56 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3971
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000823
OrthoInspector 1 1.000 - - otm45172
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12353
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.960

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