DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and LOC110437706

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_021324281.1 Gene:LOC110437706 / 110437706 -ID:- Length:462 Species:Danio rerio


Alignment Length:574 Identity:129/574 - (22%)
Similarity:216/574 - (37%) Gaps:182/574 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ADSSDISDTSGSLNFPTPVSVRDITREFTANLRERCVPNLPPQPQHKTPAYVESRSS-----ELE 76
            |.|:|.::|      |||.:|     .:|.:.: :..|.:||:...|....|.::||     :..
Zfish    15 ACSADRTET------PTPATV-----TYTPDYK-KTPPPVPPRSTTKPVISVTAQSSTESTQDAY 67

  Fly    77 HMVLSPAIVECDQEP-------SSNDFDETSAEN-SQEAPEKKPSYLNLACCVNGYSNLTTYDSK 133
            |....|......|:.       |::..|...|.. :.|:..|:      ......||::.|.|..
Zfish    68 HESRLPRGTIWAQDSLGRVIYNSTDSLDSAKAVTLAMESASKR------LTSAGSYSSVQTCDKA 126

  Fly   134 IRQDINKSREVSPIRPSTSSLQYCKRNHFLATP--TLHSMPSPATKCKPIEPNNNSNDSSGNFSS 196
            |.  ::|:.|                  :|.||  ::......||        ::..||.|   .
Zfish   127 IL--VSKAEE------------------YLKTPRSSIGIQVEAAT--------DSETDSKG---L 160

  Fly   197 GSGHSNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKF 261
            ...||.|.....::|:.|.                  ..||:...:.:..:|::....:|     
Zfish   161 PQYHSVGIQVEDEKRLGRF------------------KRSNSVTTAVQADLEMEGFPSTE----- 202

  Fly   262 KQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNGDLDLPVFRHLSQEFRAQLPTVSPKRG 326
               ..|..:|.|::..:.  |..|...:...:.:.||        |.: .:::|       |..|
Zfish   203 ---DKSLQFGGFQRHSEP--STPTQYNVVRTVRTQGL--------FSY-REDYR-------PSSG 246

  Fly   327 APRSCMAPDVLLVDNESSPDHGPTDEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILK 391
            .|..  .|:..||            |..||:.:..:             |..:.:||::|:::|.
Zfish   247 PPSP--QPEPWLV------------EPAHEAAESGR-------------VSPLRRDGSWFMQLLH 284

  Fly   392 EEQSRLLVLAALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPE 456
            .|..||.......|:.|:    ..|:||:..|.:|||.|.|.||:|||.:||..||..||:.|..
Zfish   285 SETKRLEGWCKDMEREAE----EHDLSEEILGKIRSAVGSAHLLMSQKFQQFYWLCQQNLDPSAM 345

  Fly   457 DKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQSVADQPDLHTIPTKTIKPSKV 521
            .:  .|..||.||||::.|.::.|.:.|.:::::|||||:     :.|.|:              
Zfish   346 PR--PTAQDLAGFWDLLQLSIDDVTAKFDELQQIKSNDWR-----LMDSPE-------------- 389

  Fly   522 GVSQVKTVGKASSVRVNGSAPP-----PPNSAAALKREAQRKLLLEMKRQRREA 570
                          :.....||     ||....|:.||  |.|.|: .|||:||
Zfish   390 --------------KKERKWPPPVTKRPPKGRGAIMRE--RSLDLQ-DRQRQEA 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 83/330 (25%)
LOC110437706XP_021324281.1 GKAP 137..462 CDD:308780 97/414 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3971
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
21.860

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