DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and dlgap2

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_031758364.1 Gene:dlgap2 / 100489352 XenbaseID:XB-GENE-986275 Length:1018 Species:Xenopus tropicalis


Alignment Length:654 Identity:157/654 - (24%)
Similarity:241/654 - (36%) Gaps:163/654 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GSCSLDVDADSSDISDTSGSLN-----FPTPV-------SVRDITREFTANLRERCVPN--LPPQ 59
            ||....::.||.| ||||...:     .|.|:       |..::..:..........|.  |.|.
 Frog   395 GSYIKAMEEDSGD-SDTSPKTSPKISPRPEPLLKSVGQRSHVEVQNQSYLQAASEMPPGHILDPS 458

  Fly    60 PQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETSAE---NSQEAPEKKPS-------- 113
            ..:.:|.: .||:......|.:.:...|    .|.||...|.:   .|:|.||.|.:        
 Frog   459 GNYNSPKF-RSRNQSYMRAVSTLSQASC----VSQDFLIESLQECFTSKEYPEIKMAETEINGQY 518

  Fly   114 -----------------YLNLACC--VNGYSNLTTYDSKIRQD------INKSREVSPIRPSTSS 153
                             .|:|..|  ...:|.|....:...||      |..|...|..| ||::
 Frog   519 ESVNESVFSEMDSHAVDALDLPGCFRTRSHSYLRAIQAGYSQDDDCIPAITTSNVTSSTR-STTA 582

  Fly   154 LQYCKRNHFLATPTLHSMPSPATKCKPI-----EPNNNSNDSSGNFS----------SGSGHSNG 203
            ..|.   ::..||.  .:| |.|..||:     :.:..|...:.:.|          .|.|..|.
 Frog   583 ATYA---NYKKTPP--PVP-PRTTSKPLISVTAQSSTESTQDAYHDSRTQRISPWPHDGRGLYNS 641

  Fly   204 NGSFIKQRVERLYGPGALAQGFYSPKKHG--QSPSNAA------------GRSERG-QVE-IDSL 252
            ..|....:...|....|.|....|..|..  :|.|:.|            .||..| ||| .||.
 Frog   642 TDSLDSNKAMNLALESAAAHRHVSEIKSSSVKSTSDKAVLVTKSDDFLKKRRSSIGIQVEAADSD 706

  Fly   253 QGSELARKFK----QLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNGDLDLPVFRHLSQE 313
            ..|:..|::.    |:...|..|.|::      |.|.||.:...|...|..|        |::.|
 Frog   707 SESKGHREYHSVGVQVEDEKRQGRFKR------SNSVTAAVQADLELEGFPG--------HVTME 757

  Fly   314 ----------FRAQLPTVSPKRGAPRSCMA-------PDVLLVDNESSPDHGPTDEVDHESTKMD 361
                      .|...|:...:.||.|:...       .|..:.|..:.|...|..|..||:....
 Frog   758 DKGLQFGSSFQRHSEPSTPTQYGAVRTVRTQGLFSYREDYRMPDTSNLPPPDPWLEPSHEAVDSG 822

  Fly   362 KLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVLAALAEKYADALSTNPDISEDTFGLLR 426
            :::...             :||.:|:|:|..|..|:.......|:.|:    ..|::|:..|.:|
 Frog   823 RISPSR-------------QDGTWFMKLLHAETKRMEEWCKDMEREAE----ENDLTEENLGKIR 870

  Fly   427 SASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLK 491
            ||.|.|:||:|||.:||..||..|::.|...: ||: .||.||||::.|.:|.|...|..:.:||
 Frog   871 SAVGSAQLLMSQKFQQFYWLCQQNMDPSAMPR-PTS-QDLAGFWDLLQLSIEDVSMKFDKLHQLK 933

  Fly   492 SNDWKVKAQSVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAALKREAQ 556
            :|:||     ..|.|:     .|..|...:.:.:..|.||....|......|...     ::||:
 Frog   934 ANEWK-----AVDSPE-----KKDDKKLPLPIPKKPTRGKFPITREKSLDLPDRQ-----RQEAR 983

  Fly   557 RKLL 560
            |:|:
 Frog   984 RRLM 987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 90/337 (27%)
dlgap2XP_031758364.1 GKAP 690..1018 CDD:397439 93/346 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000823
OrthoInspector 1 1.000 - - otm48238
Panther 1 1.100 - - O PTHR12353
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.100

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