DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and dlgap4

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001135624.1 Gene:dlgap4 / 100216183 XenbaseID:XB-GENE-1010901 Length:1071 Species:Xenopus tropicalis


Alignment Length:564 Identity:137/564 - (24%)
Similarity:215/564 - (38%) Gaps:147/564 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 PAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETSAENSQE----APEKKPSYLNLACCVNGYS 125
            |.|..|||    |..|......|     |.|.|.||.::...    |....|.::..:|.| || 
 Frog   599 PNYFRSRS----HSYLRAIQAGC-----SEDEDTTSLQSMSPPLPVASRTLPRHIGSSCLV-GY- 652

  Fly   126 NLTTYDSKIRQDINKSREVSPIRPSTSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDS 190
                           .:...|:.|.|:|      ..|::.    ::.|.....:....:.....|
 Frog   653 ---------------KKTPPPVPPRTTS------KPFISV----TVQSSTESAQDSYLDAQEGQS 692

  Fly   191 SGNFSSGSGHSNGNGSFIKQR---VERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQ------ 246
            .||  |.||.|....|....|   |.|:..|..:.|  ..|:   ..|.||:.:|.:.:      
 Frog   693 EGN--SQSGLSTSTESLESTRAPSVTRIGPPTPIRQ--VPPE---IPPKNASVKSNKEEPRAPEP 750

  Fly   247 ----------VEIDSLQGSELAR-----KFKQLSPSKDYGEFRKKMQKKCS--QSTTARIDEPLH 294
                      :::||:|...:..     :|:.:....: .|:|.......:  |.|.:...||.:
 Frog   751 LPKRKLSSIGIQVDSIQPVPIPELPPPARFQSIGVQVE-EEWRNSRSSSMTSKQETDSDTQEPSN 814

  Fly   295 SPGLNGDLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNE-SSPDHGPTD--EVDHE 356
            |               |.:.....||       ||....|.|.|.... |..|.|.|:  .:...
 Frog   815 S---------------SDKSITDCPT-------PRQPPCPPVPLPKKHLSYGDGGETEASALPPP 857

  Fly   357 STKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVLAALAEKYADAL---STNPDIS 418
            ...:|..||..  |:......|..:||::|||:|:.|..||       |.:...:   :.:.::.
 Frog   858 DPWLDSAASPP--SSEPAQAAACRRDGHWFLKLLQAETERL-------EGWCRQMQRETADNNLC 913

  Fly   419 EDTFGLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSI 483
            |:..|.:.||.|.|:||:|||.:||.|||..|||  |......:..||.||||::.|.:|.:...
 Frog   914 EEVIGKVLSAVGSAQLLMSQKFQQFRGLCEQNLN--PNSNPRPSAQDLAGFWDLLQLSIEDISMK 976

  Fly   484 FADIEKLKSNDWKVKAQSVADQPDLH-------TIPTKTIKPSKVGVSQVKTVGKASSVRVNGSA 541
            |.::.:||:|.|     ::::.||.:       .:|.|..:| |..:|:.|             |
 Frog   977 FDELFQLKANGW-----ALSETPDRNEMKRAPPPVPKKPARP-KPPLSRDK-------------A 1022

  Fly   542 PPPPNSAAALKREAQRKLLLEMKRQRREAMTAAAKLNPINVDAD 585
            |.|.||..  :|:..||.|:..||      .|:.:.|.....||
 Frog  1023 PGPSNSDK--QRQEARKRLMAAKR------AASVRQNSATESAD 1058

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 91/364 (25%)
dlgap4NP_001135624.1 GKAP 752..1071 CDD:281368 94/368 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000823
OrthoInspector 1 1.000 - - otm48238
Panther 1 1.100 - - O PTHR12353
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3941
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.130

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