DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta1 and pbs-1

DIOPT Version :9

Sequence 1:NP_652031.2 Gene:Prosbeta1 / 46058 FlyBaseID:FBgn0010590 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_500125.2 Gene:pbs-1 / 176978 WormBaseID:WBGene00003947 Length:242 Species:Caenorhabditis elegans


Alignment Length:208 Identity:103/208 - (49%)
Similarity:149/208 - (71%) Gaps:1/208 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VSTGTTIMAVEFDGGVVIGADSRTSSGAYVANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
            :|||||::|:|::||||:|.|||||:|:::.:|.|:|:|.|||.:..|||||||||||||||..|
 Worm    23 ISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIAKY 87

  Fly    77 SLNYHENQTNKDALVFEAASEFRNYCYSYRESLLAGIIVAGWDEQRGGQVYSIPLGGMLTRESCT 141
            .::.:....||...::.::..||.:.|:|||.|.|.::||||||:.|||||:||:||.::|:..|
 Worm    88 HIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIGGFVSRQRST 152

  Fly   142 IGGSGSSFIYGFVREHYRPNMALEDCVTFVKKAVQHAIYHDGSSGGVVRIGIITKDGIERRIFYN 206
            ..||||:|:.||:...:|||:.||:|...||:||..|.:.|||||||||:.:|.|.|.:..:|..
 Worm   153 ASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSGGVVRLAVINKAGSQFELFRP 217

  Fly   207 TESGASAVSS-TP 218
            .:.|...|.: ||
 Worm   218 DKPGFPFVQTPTP 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta1NP_652031.2 20S_bact_beta 15..201 CDD:163402 96/185 (52%)
proteasome_beta_type_6 16..203 CDD:239731 95/186 (51%)
pbs-1NP_500125.2 proteasome_beta_type_6 27..214 CDD:239731 95/186 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158263
Domainoid 1 1.000 213 1.000 Domainoid score I1604
eggNOG 1 0.900 - - E1_KOG0174
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H137657
Inparanoid 1 1.050 220 1.000 Inparanoid score I2291
Isobase 1 0.950 - 0 Normalized mean entropy S496
OMA 1 1.010 - - QHG54145
OrthoDB 1 1.010 - - D1172133at2759
OrthoFinder 1 1.000 - - FOG0001868
OrthoInspector 1 1.000 - - oto20433
orthoMCL 1 0.900 - - OOG6_101390
Panther 1 1.100 - - LDO PTHR11599
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1014
SonicParanoid 1 1.000 - - X1224
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1615.790

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