DRSC/TRiP Functional Genomics Resources

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Protein Alignment cype and Cox6c

DIOPT Version :9

Sequence 1:NP_001245885.1 Gene:cype / 46040 FlyBaseID:FBgn0015031 Length:77 Species:Drosophila melanogaster
Sequence 2:NP_062233.2 Gene:Cox6c / 54322 RGDID:620616 Length:76 Species:Rattus norvegicus


Alignment Length:69 Identity:31/69 - (44%)
Similarity:42/69 - (60%) Gaps:8/69 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PVLRGLHNATIKRNL----AVSLGLTAVVTIAYKILVNDPKKAAYADFYSKYDANKSFERMKAAG 72
            |.:|||....::.::    .|:||:.|    |||..|.:|:|.||||||..||:.|.||.|:.||
  Rat    10 PQMRGLLAKRLRVHIVGAFVVALGVAA----AYKFGVAEPRKKAYADFYRNYDSMKDFEEMRQAG 70

  Fly    73 RFQS 76
            .|||
  Rat    71 VFQS 74

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cypeNP_001245885.1 Cyt_c_Oxidase_VIc 8..77 CDD:238467 31/69 (45%)
Cox6cNP_062233.2 COX6C 6..75 CDD:397198 31/69 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I10735
eggNOG 1 0.900 - - E1_2E80A
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 56 1.000 Inparanoid score I5337
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1618740at2759
OrthoFinder 1 1.000 - - FOG0006275
OrthoInspector 1 1.000 - - otm45871
orthoMCL 1 0.900 - - OOG6_107937
Panther 1 1.100 - - LDO PTHR12916
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5226
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.870

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