DRSC/TRiP Functional Genomics Resources

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Protein Alignment cype and cox6c

DIOPT Version :9

Sequence 1:NP_001245885.1 Gene:cype / 46040 FlyBaseID:FBgn0015031 Length:77 Species:Drosophila melanogaster
Sequence 2:XP_012820048.2 Gene:cox6c / 496600 XenbaseID:XB-GENE-1001882 Length:112 Species:Xenopus tropicalis


Alignment Length:76 Identity:32/76 - (42%)
Similarity:46/76 - (60%) Gaps:12/76 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SAG----PVLRGLHNATIKRNL----AVSLGLTAVVTIAYKILVNDPKKAAYADFYSKYDANKSF 65
            |||    |.:|||....::.::    |||||:.|:    ||..|.:|:|.||||:|..:|:.|.:
 Frog    35 SAGLLAKPQMRGLLGKRLRFHIIGAFAVSLGVVAL----YKFGVAEPRKRAYADYYKNFDSMKEY 95

  Fly    66 ERMKAAGRFQS 76
            |.|:.||.|||
 Frog    96 EAMREAGVFQS 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cypeNP_001245885.1 Cyt_c_Oxidase_VIc 8..77 CDD:238467 32/76 (42%)
cox6cXP_012820048.2 COX6C 38..107 CDD:397198 29/73 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 52 1.000 Domainoid score I11352
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 53 1.000 Inparanoid score I5261
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1618740at2759
OrthoFinder 1 1.000 - - FOG0006275
OrthoInspector 1 1.000 - - oto104504
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5533
SonicParanoid 1 1.000 - - X5226
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.090

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