DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phb2 and Stom

DIOPT Version :9

Sequence 1:NP_001097372.1 Gene:Phb2 / 46038 FlyBaseID:FBgn0010551 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001011965.1 Gene:Stom / 296655 RGDID:1305109 Length:284 Species:Rattus norvegicus


Alignment Length:230 Identity:53/230 - (23%)
Similarity:102/230 - (44%) Gaps:36/230 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 RAIIFSRLGGI-QSDIYSEGLHVRIPWFQYPIIYDIRS-----RPRKISSPTGSKDLQMINISLR 108
            |.||| |||.| |......||...:|.....|..|:|:     .|:::.    :||...|::...
  Rat    62 RVIIF-RLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEVL----TKDSVTISVDGV 121

  Fly   109 VLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQRQQVSLLIRKELVERA 173
            |..|..:..|...:    :...:.....:....|::.:...|.||:::.|::::..::..|.:..
  Rat   122 VYYRVQNATLAVAN----ITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDAT 182

  Fly   174 RDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRAVFFVERAKQEKQQKIVQAEGEAEAAKM 238
            .|:.|.::.|.:.::..              ..:.|||:.....|.:|.:.|::.||||..|::.
  Rat   183 DDWGIKVERVEIKDVKL--------------PVQLQRAMAAEAEAAREARAKVIAAEGEMNASRA 233

  Fly   239 L---GLAVKQNPAYLKLRKLRAAQSIARTIASSQN 270
            |   .:.:.::||.|:||.|:.    ..|||:.:|
  Rat   234 LKEASMVITESPAALQLRYLQT----LTTIAAEKN 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Phb2NP_001097372.1 SPFH_prohibitin 42..236 CDD:259799 41/191 (21%)
StomNP_001011965.1 PHB 53..204 CDD:214581 31/164 (19%)
SPFH_stomatin 73..274 CDD:259801 45/218 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0330
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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