DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Ccs and sod-1

DIOPT Version :9

Sequence 1:	NP_001163108.1	Gene:	Ccs / 46035	FlyBaseID:	FBgn0010531	Length:	264	Species:	Drosophila melanogaster
Sequence 2:	NP_001021956.1	Gene:	sod-1 / 174141	WormBaseID:	WBGene00004930	Length:	180	Species:	Caenorhabditis elegans

Alignment Length:	165	Identity:	61/165 - (36%)
Similarity:	97/165 - (58%)	Gaps:	10/165 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    72 QSAVALINTTGSVVDKTPIQGVVRFTTITADKKPGVVVDGVVDGLSPGLHGLHIHESGDTSAGCS 136
            ::|..:.|...:|:....:.|.:..|..:.:.:  .|::|.:.||:|||||.|:|:.||::.||.
Worm    18 EAAQKMSNRAVAVLRGETVTGTIWITQKSENDQ--AVIEGEIKGLTPGLHGFHVHQYGDSTNGCI 80

  Fly   137 SVGEHYNPRQSPHGSPAAGAEERHAGDLGNIRADENGRATFRFVDPVLEVW---DIIGRAVVLTA 198
            |.|.|:||....||.|.  :|.||.|||||:.|..:|.|..:..|.::.::   .::||::|:.|
Worm    81 SAGPHFNPFGKTHGGPK--SEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHA 143

  Fly   199 NADDLGRGGND---QSLIDGNSGERIACGIIARSA 230
            ..||||.|..|   :|...||:|.|.|||:||.:|
Worm   144 GQDDLGEGVGDKAEESKKTGNAGARAACGVIALAA 178

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Ccs	NP_001163108.1	PLN02957	1..253	CDD:215516	61/165 (37%)
		HMA	5..64	CDD:238219
		Cu-Zn_Superoxide_Dismutase	72..223	CDD:238186	55/156 (35%)
sod-1	NP_001021956.1	Cu-Zn_Superoxide_Dismutase	26..171	CDD:238186	53/148 (36%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D608177at33208
OrthoFinder	1	1.000	-	-		FOG0000641
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.920