DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ccs and Ccs

DIOPT Version :9

Sequence 1:NP_001163108.1 Gene:Ccs / 46035 FlyBaseID:FBgn0010531 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_058588.1 Gene:Ccs / 12460 MGIID:1333783 Length:274 Species:Mus musculus


Alignment Length:264 Identity:124/264 - (46%)
Similarity:175/264 - (66%) Gaps:22/264 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IEFAVQMRRGDESYAGALRSALDGVG---QVEIDTQEGRVIIQTQRPWSEIQDKIEATGVRAVLS 67
            :||||||  ..:|...|:...|.||.   .|::..:...|::||..|..|:|..:|:||.:|||.
Mouse    14 LEFAVQM--SCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLK 76

  Fly    68 GFGGQ------SAVALINTTGSVVDKTPIQGVVRFTTITADKKPGVVVDGVVDGLSPGLHGLHIH 126
            |.|..      :|||::...||      |||||||..::::.   .:::|.:|||.|||||||:|
Mouse    77 GMGSSQLQNLGAAVAILEGCGS------IQGVVRFLQLSSEL---CLIEGTIDGLEPGLHGLHVH 132

  Fly   127 ESGDTSAGCSSVGEHYNPRQSPHGSPAAGAEERHAGDLGNIRADENGRATFRFVDPVLEVWDIIG 191
            :.||.:..|:|.|:|:||..:.||.|.  ..:||.|||||:||:..||||||..|..|:|||:||
Mouse   133 QYGDLTRDCNSCGDHFNPDGASHGGPQ--DTDRHRGDLGNVRAEAGGRATFRIEDKQLKVWDVIG 195

  Fly   192 RAVVLTANADDLGRGGNDQSLIDGNSGERIACGIIARSAGILENFKRICACDGVTLWDERNKPLA 256
            |::|:....|||||||:..|.|.||||:|:||||||||||:.:|.|:||:|||:|:|:||.:|:|
Mouse   196 RSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIA 260

  Fly   257 GKER 260
            |:.|
Mouse   261 GQGR 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CcsNP_001163108.1 PLN02957 1..253 CDD:215516 120/255 (47%)
HMA 5..64 CDD:238219 21/60 (35%)
Cu-Zn_Superoxide_Dismutase 72..223 CDD:238186 73/156 (47%)
CcsNP_058588.1 PLN02957 13..253 CDD:215516 115/247 (47%)
HMA 15..73 CDD:238219 21/60 (35%)
Superoxide dismutase-like 88..234 73/145 (50%)
Cu-Zn_Superoxide_Dismutase 89..227 CDD:238186 68/137 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830724
Domainoid 1 1.000 157 1.000 Domainoid score I4170
eggNOG 1 0.900 - - E1_COG2608
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3762
Inparanoid 1 1.050 240 1.000 Inparanoid score I3345
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55645
OrthoDB 1 1.010 - - D608177at33208
OrthoFinder 1 1.000 - - FOG0000641
OrthoInspector 1 1.000 - - oto92002
orthoMCL 1 0.900 - - OOG6_105544
Panther 1 1.100 - - LDO PTHR10003
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4858
SonicParanoid 1 1.000 - - X4274
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

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