DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)01289 and PDI1

DIOPT Version :9

Sequence 1:NP_001163065.1 Gene:l(2)01289 / 46017 FlyBaseID:FBgn0010482 Length:1786 Species:Drosophila melanogaster
Sequence 2:NP_009887.1 Gene:PDI1 / 850314 SGDID:S000000548 Length:522 Species:Saccharomyces cerevisiae


Alignment Length:619 Identity:122/619 - (19%)
Similarity:198/619 - (31%) Gaps:210/619 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   685 VLEW---LLVQKKTATIEEVT--DEILVTL--------INEHEYVVVFFTGPCEPGETCEHTLN- 735
            ||.|   ||.....|..|.|.  |..:|.|        |..|:.|:..|..|     .|.|..| 
Yeast     8 VLSWSSLLLASSVFAQQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAP-----WCGHCKNM 67

  Fly   736 ALESID--DELDEAGIIFV---TTEDTGIAKKYNVKTYPRLVFFRNRD---PLHFTGDLDDEDEV 792
            |.|.:.  :.|.|..|...   .||:..:..::|:..:|.|..|:|.|   .:.:.|....|..|
Yeast    68 APEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIV 132

  Fly   793 LAWITDDE-----TLEIPGKIEEVNVKMLDKILAENDHVVVFFYAEGDKKAQKILNELENIDDEC 852
            ...|...:     ..::|..:  .|...:..::.::..:...|.|.....|.|..|         
Yeast   133 QFMIKQSQPAVAVVADLPAYL--ANETFVTPVIVQSGKIDADFNATFYSMANKHFN--------- 186

  Fly   853 EEKDIDFV--KTSDDDIDKEYDLPGL---PALAFYRHKFRTIYTGDLMKEEEILEWVIDLHESTA 912
               |.|||  :.:|||......||..   |          .:|.|   |:.:|.:         |
Yeast   187 ---DYDFVSAENADDDFKLSIYLPSAMDEP----------VVYNG---KKADIAD---------A 226

  Fly   913 DVIE------------SVDRKTLQVLINDVEHLAVFFYDDECESCSDILEELENIDDDTDKHG-- 963
            ||.|            .:|.......:.....|...||:||.|     |||.:.:..:..|..  
Yeast   227 DVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEE-----LEEYKPLFTELAKKNRG 286

  Fly   964 -IQFVKSNDVKLAHEIGIF----AFPALVYYETGVPIMYDGNIASNQDVFN-----WILEQKADQ 1018
             :.||..:..|.....|..    .||....::....:.| |....:::.|:     .:||.||.:
Yeast   287 LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKY-GLPQLSEEAFDELSDKIVLESKAIE 350

  Fly  1019 SIQLINRDQLFEYIGTKDFLAVVFYKEDDPDSPRVLRHIELIDDEAAEYGIYIVKMHDKLMAKKY 1083
            |:             .||||        ..|:..:::..|:.:::.:.....:.|.||::     
Yeast   351 SL-------------VKDFL--------KGDASPIVKSQEIFENQDSSVFQLVGKNHDEI----- 389

  Fly  1084 GFRNPPGLTYFRKGKYINYDGDIDDEEEVLDWLTSPANMEMTDHIEQVNRKMFEKIRKNSDYVAV 1148
                            :|     |.:::||                                  |
Yeast   390 ----------------VN-----DPKKDVL----------------------------------V 399

  Fly  1149 IFYSDECKQCPRVLAEVEHIDDEADKAGID--FVKIDDKQM-AKEYGVFALPAIVFFKPTSK-EP 1209
            ::|:..|..|.|:....:.:.|....|..|  ..|:|..:. .:...:...|.||.:....| |.
Yeast   400 LYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSES 464

  Fly  1210 VIYAGD----------------------LYEEEQ 1221
            |:|.|.                      ||||.|
Yeast   465 VVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQ 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)01289NP_001163065.1 PDI_a_family 50..145 CDD:239259
PDI_a_family 384..479 CDD:239259
Thioredoxin_6 510..689 CDD:404691 3/6 (50%)
ER_PDI_fam 700..>916 CDD:273457 53/244 (22%)
PDI_a_family 1129..1226 CDD:239259 23/119 (19%)
TRX_family 1433..>1502 CDD:239245
PDI1NP_009887.1 ER_PDI_fam 32..492 CDD:273457 108/587 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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