DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)01289 and pdia3

DIOPT Version :9

Sequence 1:NP_001163065.1 Gene:l(2)01289 / 46017 FlyBaseID:FBgn0010482 Length:1786 Species:Drosophila melanogaster
Sequence 2:NP_989329.1 Gene:pdia3 / 394954 XenbaseID:XB-GENE-976328 Length:501 Species:Xenopus tropicalis


Alignment Length:588 Identity:103/588 - (17%)
Similarity:199/588 - (33%) Gaps:183/588 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   692 QKKTATIEEVTDEILVTLINEHEYVVVFFTGPCEPGETCEH-----------------TLNALES 739
            |...:.:.::||:...:.:::|..::|.|..|     .|.|                 || :|..
 Frog    19 QAAGSDVLDLTDDNFESTVSQHSILLVEFFAP-----WCGHCKKLAPEYEIAATKLKGTL-SLAK 77

  Fly   740 IDDELDEAGIIFVTTEDTGIAKKYNVKTYPRLVFFRNRDPLHFTGDLDDEDEVLAWITDDETLEI 804
            :|           .|.::....||.|..||.|..||:.:.   :|..|........::..:....
 Frog    78 VD-----------CTANSNTCNKYGVSGYPTLKIFRDGED---SGSYDGPRTADGIVSTMKKQAG 128

  Fly   805 PGKIEEVNVKMLDKILAENDHVVVFF----YAEGDKKAQKILNELENIDDECEEKDIDFVKTSDD 865
            |..::..:|...:|.:::.|..||.|    |:....:..|..|.|.:        :..|..|.:.
 Frog   129 PASVDLRSVGEFEKFISDKDASVVGFFRDLYSGPHSEFLKAANTLRD--------NYRFAHTDEK 185

  Fly   866 DIDKEYDLPGLPALAF----YRHKFR----TIYTGDLMKEEEILEWVID--------LHESTADV 914
            ::..:||..|...:.|    ..:||.    |....:.:...:|.:::.|        |.|...|:
 Frog   186 ELVDKYDSNGEGFVLFRPQHLANKFEDSSVTFPADEKITSSKIKKFIQDNIFGLCPHLTEDNKDL 250

  Fly   915 IESVDRKTLQVLINDVEHLAVFFYDDECESCSDILEELENIDDDTDKHGIQFVKSNDVKLAHEIG 979
            |:..|             |.|.:||               :|.:.:..|..:.::..:|:|..  
 Frog   251 IQGKD-------------LLVAYYD---------------VDYEKNVKGTNYWRNRVMKVAKS-- 285

  Fly   980 IFAFPALVYYETGVPIMYDGNIASNQDVFNWILEQKADQSIQLINRDQLFEY---IGTKDFLAVV 1041
                    :.:.|..:.:   ..:|:..|.                .::.|:   .||.: |.||
 Frog   286 --------FVDAGKKLNF---AVANRKAFG----------------HEVTEFGLDAGTGE-LPVV 322

  Fly  1042 FYKEDDPDSPRVLRHIELIDDEAAEYGIYIVKMHDKLMAKKYGFRNPPGLTYFRKGKYIN----- 1101
                                      ||...|      .:||..:.    .:.|.||.:.     
 Frog   323 --------------------------GIKTAK------GEKYAMQE----EFSRDGKALERFLQD 351

  Fly  1102 -YDGDID---DEEEVLDWLTSPANMEMTDHIEQVNRKMFEKIRKNSDYVAVIFYSDECKQCPRVL 1162
             :||.:.   ..|.:.:....|..:.:.::.:::       :..:|..|.:.||:..|..|..:.
 Frog   352 YFDGKLKRYMKSEAIPESNDGPVKVVVAENFDEI-------VNDDSKDVLIEFYAPWCGHCKNLE 409

  Fly  1163 AEVEHIDDE-ADKAGIDFVKID--DKQMAKEYGVFALPAIVFFKPTSKE-PVIYAGDLYEEEQIL 1223
            .:.:.:.:: .|...|...|:|  ...:..:|.|...|.|.|....||: |..|.|. .|....|
 Frog   410 PKYKELGEKLGDDPNIVIAKMDATANDVPSQYEVRGFPTIYFTPAGSKQKPKRYEGG-REVSDFL 473

  Fly  1224 TWL 1226
            ::|
 Frog   474 SYL 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)01289NP_001163065.1 PDI_a_family 50..145 CDD:239259
PDI_a_family 384..479 CDD:239259
Thioredoxin_6 510..689 CDD:404691
ER_PDI_fam 700..>916 CDD:273457 48/252 (19%)
PDI_a_family 1129..1226 CDD:239259 22/100 (22%)
TRX_family 1433..>1502 CDD:239245
pdia3NP_989329.1 ER_PDI_fam 23..483 CDD:273457 102/584 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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