DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hlk and mpd1

DIOPT Version :10

Sequence 1:NP_001163065.1 Gene:hlk / 46017 FlyBaseID:FBgn0010482 Length:1786 Species:Drosophila melanogaster
Sequence 2:NP_593653.1 Gene:mpd1 / 2542841 PomBaseID:SPAC13F5.05 Length:363 Species:Schizosaccharomyces pombe


Alignment Length:356 Identity:74/356 - (20%)
Similarity:132/356 - (37%) Gaps:88/356 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RLKTLSLLVCALLALSFPGHVSGAGNNNNKKGSQPVAPPEPEAVIEEVNAKQLEKLLADKDYVAV 69
            |:.||..|..|..:|     |||....:...||..:          |:|:|...|.:..|....|
pombe     4 RIPTLFTLFLACFSL-----VSGVFGYSPMFGSNTI----------ELNSKNFRKFVKAKGPSLV 53

  Fly    70 FWYARSCVTCDKVLAELEKIDDDTDSF----GVDFVKINDKRLAKQYGIKNFPALTYFREKEPII 130
            .:||..|..|.|::...:|:..:..|.    .||.....::.:..||.::.||.:       .::
pombe    54 VFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTI-------KLV 111

  Fly   131 YDGDLMDEEGVLDFLTSLEAMDL-PDRIEEVNAKILQKIIEDTDFVAVLFCPDHETCPPRVMDKQ 194
            |.    ..:|     :||.:.|. .||    :.|.|||.:.|:....|............:.|.|
pombe   112 YP----SSKG-----SSLSSTDYNGDR----SYKSLQKFVSDSIPSKVKILTSEAKTQKFIQDAQ 163

  Fly   195 QCRKCAKALQEL------ENIDDEADQLGIGFVKIHDEALADEYNLGNLPA--------LVYYRH 245
            ...|.....|::      :::.:|...|...|:    .|.|:..:|.|:.|        :::.:|
pombe   164 NSSKVILISQKMKPTLLYKSLSNEFSSLPFSFM----PAKANVNDLFNISAYVDTSDLPILFIKH 224

  Fly   246 QT--PIIYEGELQREEDVLEWLVQNKSTGDEDDVIEDVTSKTLSTLISNIDNLVVL---FYDHGN 305
            ..  ...:...|.| :.::|:|        :..:.::..|:.|:|..|....::.:   ..|.|.
pombe   225 PNNGTSFFSNSLNR-DSIVEFL--------QSSIKDNNFSEYLATFCSKKSCIITIQDKDSDSGI 280

  Fly   306 DDSM----------------TVLEELEQIDD 320
            |:|:                ||.|.||...|
pombe   281 DESIRKKYPKLHFVRLGRNTTVAERLEDTLD 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hlkNP_001163065.1 PDI_a_family 50..145 CDD:239259 21/98 (21%)
ER_PDI_fam 381..>670 CDD:273457
PDI_a_family 384..479 CDD:239259
ER_PDI_fam 700..>916 CDD:273457
PDI_a_family 1129..1226 CDD:239259
TRX_family 1433..>1502 CDD:239245
mpd1NP_593653.1 ER_PDI_fam 31..>257 CDD:273457 51/268 (19%)
PDI_a_MPD1_like 32..139 CDD:239300 30/136 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.