DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tutl and ush2a

DIOPT Version :9

Sequence 1:NP_001303307.1 Gene:tutl / 46015 FlyBaseID:FBgn0010473 Length:1536 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:1264 Identity:234/1264 - (18%)
Similarity:410/1264 - (32%) Gaps:364/1264 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TTIPASKTLTASPAKTAAFTVKTTRRRRSRRRAEGSSICVPIRRGQGSTPTPTIQV--------L 111
            |||   :||.|||:..|.|:|:        ||..|.::.  ::..:.::|...|::        |
Zfish  4082 TTI---RTLEASPSGLANFSVE--------RREHGRALL--LQWAEPASPNGVIKMYNIFNEDNL 4133

  Fly   112 QF----------------VLVSLLALLAKNAQAHNIPEDAVHITAILGEGVIFNCHVEFPNDHPV 160
            :|                |...:|....:.....:.|:......||             |:..|.
Zfish  4134 EFSGLARQFLFRRLEPYTVYTLILEACTEAGCTRSAPQRVTTEEAI-------------PSSQPA 4185

  Fly   161 PYVLQ---------WDKKVSETGSDLPIYIWYESYPEHIEEG---------YKGRVSRVSQDSPF 207
            |.|.|         |.......|..|.    |:.....:|:|         .:.::..:..::..
Zfish  4186 PTVYQVHSRSVELFWSPPAQPNGRILQ----YQLLAVRLEDGRVRSDEDDSLRAKIVFIQNNTQA 4246

  Fly   208 GSASLNLTNIRESDQGWYECKVVFLNRDPKQHKNGTWFHLDV-HAPPRFSVTPEDIIYVNLGDSI 271
            .|.|.|::.:..    |...|......:.....:..|..:.. .|||| .:.|..:.::      
Zfish  4247 NSFSYNMSGLLP----WSRYKFRVRVSNAAGFTDSPWLTVQTKQAPPR-GLAPPSVSHI------ 4300

  Fly   272 ILNCQADGTPTPE-ILWYKDANPVDPSPTVGIFNDGTELRISTIRHEDIG----------EYTCI 325
                  :|.|... :.|   ..|::|:   |:      |....|:.::||          .||.:
Zfish  4301 ------EGKPNEVFVAW---TPPLEPN---GV------LLTYRIQRDNIGFHFSFDSSVFNYTDV 4347

  Fly   326 ARNGEGQVSHTARVIIAGGAVIMVPPTNQTKLEG------EKVIFSCEAKAMPGNVTVRWYREGS 384
            ..|.....|:........|.|.. .||....|||      ..::....:.::..:.||..::.|.
Zfish  4348 DLNAYTLYSYAIIACTVAGCVTS-GPTQIRTLEGAPATVDSPILSDITSYSLNVSWTVPSFQNGE 4411

  Fly   385 PVREVAALETRVTIR-KDGSLIINPIKPDDS-GQYLCEVTNGIGDPQSASAYLSVEYPAKVTFTP 447
            .|..:..:......| |..|:.:..::|..| ...|...|||.....|.....:.|.|......|
Zfish  4412 IVVYILKVNNDEVYRGKRLSVQVLDLQPHVSYSIILTACTNGGCTSSSPILIQTREAPPSGMPAP 4476

  Fly   448 TVQYLPFRLAGVVQCYIKSSPQLQYVTWTKDKRLLEPYQMKDIV----VMANGSLLFTRVNEEH- 507
            |::.              :.|:...|||.      ||.....::    :..||||::|..:..: 
Zfish  4477 TLKV--------------TGPESVEVTWR------EPVHPNGVIMGYELRRNGSLIYTGTDTRYH 4521

  Fly   508 --------QGQYACTPYNAQGTAGASGVMDVLVRKPPAFTVEPETLYQRKVGDSVEMHCDALEAE 564
                    :..|..|..|::|...:...:.......|:....|.                 |:|.
Zfish  4522 DFTLLPSVEYSYTITANNSEGATTSPPAVARTQPSAPSGVAPPR-----------------LQAL 4569

  Fly   565 GTERPTIKWQ---RQEGEQLTES------QRNRIK----------ISGGNITIENLRREDFGYYQ 610
            |.....:||.   |..|..::.|      ..|.:|          ....:.::..|:    .||:
Zfish  4570 GPFSVMVKWDPPARPNGVIISYSLYKRDPAENNVKRFVFASHHSAFQSRSFSLNTLK----PYYR 4630

  Fly   611 CVVSNEVATLMAVTQLVIEGTQ-----------PHAPYNITGKATESSITLQWLPGYSGGSEYKQ 664
            ..|..|..:|:..........|           |........|..::...|.|.|......:...
Zfish  4631 YEVRVEACSLLGCAASDWSSIQTLESPPAGQPAPLLELQTNPKGLQTVFLLSWSPPTEPNGKLLH 4695

  Fly   665 DYTIWFREAGVNDWQTISVT----PSGSTQVTINGLASGTTYEFQVVGRNVLG------------ 713
             |.::.:.  ::|.::.|||    ...||....:.|...|.||:||...|..|            
Zfish  4696 -YELYRKH--LSDMESRSVTTLVYSDSSTSCHDDKLQPYTAYEYQVWAVNSAGRAGSPWAQGHTG 4757

  Fly   714 ----DGMMSK----VMTVRTLED--APAAPRNV----KAATQPPDSFFQLMPDEADL------LA 758
                :|:.|.    :.:...:.|  .|..|..:    :...|..|| :||:.:....      |.
Zfish  4758 PAPPEGISSPKFLYIYSTSAVVDISPPTKPNGIISLYRVFAQNKDS-YQLLSEGTSHQQTLHGLR 4821

  Fly   759 YFDIY---------FHTDSRGTLVYSPPKLRVKGPKPG---PPRNVSVTEVSNGFLITWQSPLER 811
            .|.:|         |...|||.|    .:||.:...|.   |||.:::|  |...|:.|..||:.
Zfish  4822 PFTVYSVGVEVCTCFLCCSRGPL----SELRTQASAPAQQPPPRPIALT--SRSALVEWDMPLQP 4880

  Fly   812 AHIVKFYTIKYRTD----------------AQWKTLNRGQIRPEETQYLVKNLVGGRTYYFRVLA 860
            ..|::...::.|..                .:.|....||      .:.:..|:....|...|::
Zfish  4881 NGIIESCELQVRLSCPQPPQPVPVPCAIGPVEVKFFGMGQ------SFNISGLLPYANYELCVVS 4939

  Fly   861 NSEKSYESSDEV-----KFP---VPARVKHKAITAGVVGGILFF-----IVAIILSVCAVKICN- 911
            .:.....:||.|     |.|   :.|.|.|..:|:..|.....|     :....|:..::::.: 
Zfish  4940 YNNMGSTASDWVSITTLKEPPQYMEAFVVHSNLTSVFVDWSGSFSLNGPLTEYSLTESSLRVYSG 5004

  Fly   912 ----KRKRRKQEKEFNMVACRITDARNIAANNHHLHNRSTG-----SISSGQVPL-----KKYKQ 962
                ....|..:|.|.......||:.: |::....:|.:||     |.|.|:..|     |.|.:
Zfish  5005 FHSFLHIPRTSDKTFAFQVTCTTDSGS-ASSPVIKYNTATGIDAVESSSGGKTGLYGSEYKFYTE 5068

  Fly   963 TRISSLTA----ILIAILHWI---------------------------WPP---------DRCTN 987
            .....|.|    :|:|:|..:                           :||         :.|:|
Zfish  5069 LWFIILMALVGLLLLALLMGLVLKRALSKPPFIRERPPIMPLQRRSTKYPPKDSYLRASSELCSN 5133

  Fly   988 -CHSIYSSPNLEDGDEDDGGGGRRRSVSRIQRSLDGRFVLDVEGVSKL--GYSQQTLESGNVDVV 1049
             ..:....|:...|..|...||...|....|.|:.   ||.|...|:|  .|||.:|......::
Zfish  5134 HASTALLQPDTPMGLTDTKIGGTCTSNHSYQASMS---VLRVPSQSQLSHAYSQNSLHRSVSQLI 5195

  Fly  1050 DGGLFERRNSNVSQKSSSDDGGFLSRRNF 1078
            |   .:.:.|..:...::|.|.::...:|
Zfish  5196 D---TQDKKSWDADLHATDSGMYVGDEDF 5221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tutlNP_001303307.1 V-set 137..250 CDD:284989 19/131 (15%)
IG_like 137..229 CDD:214653 17/109 (16%)
I-set 253..341 CDD:254352 17/98 (17%)
IGc2 268..331 CDD:197706 13/73 (18%)
I-set 346..437 CDD:254352 20/98 (20%)
Ig 349..437 CDD:299845 19/95 (20%)
Ig 459..530 CDD:299845 15/83 (18%)
IG_like 549..628 CDD:214653 16/97 (16%)
IGc2 551..617 CDD:197706 14/84 (17%)
FN3 633..725 CDD:238020 22/115 (19%)
FN3 786..874 CDD:238020 21/111 (19%)
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486
EGF_Lam 529..577 CDD:238012
EGF_Lam 586..638 CDD:238012
Laminin_EGF 653..703 CDD:278482
Laminin_EGF 706..756 CDD:278482
EGF_Lam 759..797 CDD:214543
Laminin_EGF 808..857 CDD:278482
EGF_Lam 859..912 CDD:238012
EGF_Lam 913..963 CDD:238012
EGF_Lam 965..1014 CDD:238012
EGF_Lam 1015..1064 CDD:238012
FN3 1177..1253 CDD:238020
FN3 1264..1375 CDD:238020
FN3 1386..1469 CDD:214495
LamG 1537..1699 CDD:238058
LamG 1737..1890 CDD:238058
FN3 1981..2071 CDD:238020
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020
FN3 2352..2443 CDD:238020
FN3 2447..2544 CDD:238020
FN3 2547..2633 CDD:238020
FN3 2635..2733 CDD:238020
FN3 2743..2807 CDD:238020
FN3 2830..2932 CDD:238020
fn3 2939..3014 CDD:278470
FN3 3032..>3099 CDD:238020
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020 3/6 (50%)
FN3 4186..4284 CDD:238020 15/105 (14%)
fn3 4288..4366 CDD:278470 18/102 (18%)
FN3 4382..4465 CDD:238020 14/82 (17%)
FN3 4470..4553 CDD:238020 17/102 (17%)
FN3 4555..4653 CDD:238020 18/118 (15%)
FN3 4679..4753 CDD:238020 18/76 (24%)
fn3 4760..4830 CDD:278470 13/70 (19%)
FN3 4864..4955 CDD:238020 17/98 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.