DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and mstnb

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_571094.2 Gene:mstnb / 798441 ZFINID:ZDB-GENE-990415-165 Length:374 Species:Danio rerio


Alignment Length:377 Identity:79/377 - (20%)
Similarity:141/377 - (37%) Gaps:99/377 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RRQAEPNLHNSASK----------FLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEI 107
            |.:..||:.....|          .||:.|:.:.:|.:...|                 |:..|.
Zfish    66 RLKQAPNISRDVVKQLLPKAPPLQQLLDQYDVLGDDSKDGAV-----------------EEDDEH 113

  Fly   108 ASCNSILTFSSRLKP-EQLDNE-------LDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRA 164
            |:..:|:|.::...| .|:|.:       ....|..|        .:|:|.|.::.:|:  :...
Zfish   114 ATTETIMTMATEPDPIVQVDRKPKCCFFSFSPKIQAN--------RIVRAQLWVHLRPA--EEAT 168

  Fly   165 NFTVSVYRKLDNRQDFSYRILG-SVNTTSSQRGWLEFNLTDTLRYWLH----NKGLQRRNELRIS 224
            ...:.:.|.:..:....:||.. .::..:....|...::...|..||.    |:|::      |:
Zfish   169 TVFLQISRLMPVKDGGRHRIRSLKIDVNAGVTSWQSIDVKQVLTVWLKQPETNRGIE------IN 227

  Fly   225 IGDSQLSTFAAGLVTPQASRTSLEPFI-VGYFNGPELLVKIQKLRFKRD--LEKRRAGGGSPPPP 286
            ..|::.:..|  :.:.:.....|.||: |....||:        |.:||  |:            
Zfish   228 AYDAKGNDLA--VTSTETGEDGLLPFMEVKISEGPK--------RIRRDSGLD------------ 270

  Fly   287 PPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQT 351
                .|.......|.|...||||::... :|:||||:::|.:|.|.|::....|...|       
Zfish   271 ----CDENSSESRCCRYPLTVDFEDFGW-DWIIAPKRYKANYCSGECDYMYLQKYPHT------- 323

  Fly   352 LMHLKQPHLPK----PCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
              ||.....|:    |||.||.:..|.:|.:..::.|...|....|...|||
Zfish   324 --HLVNKASPRGTAGPCCTPTKMSPINMLYFNGKEQIIYGKIPSMVVDRCGC 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 39/224 (17%)
TGFB 300..400 CDD:214556 33/104 (32%)
mstnbNP_571094.2 TGFb_propeptide 38..252 CDD:279078 37/220 (17%)
TGFB 280..374 CDD:214556 33/104 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.