DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and gdf10b

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001165060.2 Gene:gdf10b / 794493 ZFINID:ZDB-GENE-120316-1 Length:385 Species:Danio rerio


Alignment Length:84 Identity:18/84 - (21%)
Similarity:38/84 - (45%) Gaps:25/84 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 EQLDNELDMHITFNTN-----------DVP-VDLSLVQAMLRI-YKQPSLVDRRANFTVSVYRKL 174
            :::...|.:..|::|:           |.| ||.|:.:.::.: :|.||          :.|.:.
Zfish   100 QEISESLSVEFTYSTDFYNEKTHKCTLDFPAVDASVHKDVIEVSFKHPS----------AFYERA 154

  Fly   175 DNRQDFSYRILGSVNTTSS 193
            ...::|.|.|:  :|.:||
Zfish   155 SLEEEFEYTII--LNPSSS 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 18/84 (21%)
TGFB 300..400 CDD:214556
gdf10bNP_001165060.2 FN3 21..104 CDD:328772 0/3 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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