DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and inha

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001038669.1 Gene:inha / 570520 ZFINID:ZDB-GENE-060503-554 Length:347 Species:Danio rerio


Alignment Length:437 Identity:94/437 - (21%)
Similarity:154/437 - (35%) Gaps:137/437 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNVFFLTSLFYAASATTYVTTNNHIEMPI-----YQKRPLSEQMEM----IDILDLGDRPRRQA- 56
            |:.|....:.:|..:...|......|:|.     :.||.:.|.:.:    :.:|.|   |.||| 
Zfish     8 LSSFACALMLWALFSPPSVQACQGDELPCDMVLGWLKRRILEGLGLDEPPLPVLQL---PTRQAG 69

  Fly    57 EPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTFSSRLK 121
            ...:|:.||:...|...|....||..:|:           :..|:|     ::|..|...||...
Zfish    70 NRAVHHVASRMTRETRVERRHHQESSQVI-----------LFPSSE-----STCKDIPGHSSDAG 118

  Fly   122 PEQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILG 186
            |.        |.|:                  |.|||| |.:.:...|.:...     ::...:.
Zfish   119 PG--------HFTY------------------YFQPSL-DSQESIITSAHFWF-----YAGETIA 151

  Fly   187 SVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFA--AGLVTPQASRTSL-- 247
            |:|.::..     |.||       |||.|.:.:|..:.......:|:.  ..|.||.|....:  
Zfish   152 SINISAPL-----FILT-------HNKELLKASESPVKRSPDGWTTYKLDVHLHTPMADGQFMLQ 204

  Fly   248 --------------EPFIVGY--FNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPV--DLY 294
                          .||:..:  .:||:              ..|||    |..|..|..  :|.
Zfish   205 IRCPTCSCHDSEDKTPFLHLHTRSSGPD--------------RSRRA----PKIPWSPDAIENLK 251

  Fly   295 RPPQ---SCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLK 356
            ||..   .|.|....:.|::|..:||::.||.|..|:|.|.|          ::...:.|::.:.
Zfish   252 RPASQGTDCRREQIEISFEDLGWNNWIVHPKSFTFYYCHGNC----------SSAERITTILGIT 306

  Fly   357 QPHLPKPCCVPTVLGAITILRY-LNEDIIDLTKYQ---KAVAKECGC 399
            |      ||.| |..::..||: ...|.....||:   ..:.:||.|
Zfish   307 Q------CCAP-VPESMKSLRFTTTSDGGYSFKYETLPNIIPEECNC 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 47/237 (20%)
TGFB 300..400 CDD:214556 27/104 (26%)
inhaNP_001038669.1 TGF_beta 258..346 CDD:278448 26/104 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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