DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and gdf6a

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001153466.1 Gene:gdf6a / 566470 ZFINID:ZDB-GENE-980526-373 Length:404 Species:Danio rerio


Alignment Length:421 Identity:98/421 - (23%)
Similarity:157/421 - (37%) Gaps:130/421 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGDRPRR-QAEPNLHNSAS 65
            ||..|..|...|.:.|::|..... ::.:   .||..|..:.|:..|.|:... .||        
Zfish    90 LNASFFRSSKSANTITSFVDKGKD-DLTL---SPLRRQTYLFDVSTLSDKEELVGAE-------- 142

  Fly    66 KFLLEVYNEISEDQEPK-------EVLHQRHKRSLDD---DILISNEDRQEIASCNSILTFSSRL 120
               |.::.:...|.:|.       .:|..|.:|.|..   |:..|.:...|:.....|  |..|.
Zfish   143 ---LRIFRKSPGDVQPSPSGVYNLHLLSCRSERPLASRSIDLQDSRKAEWEVLDVWGI--FKHRH 202

  Fly   121 KPEQLDNELDMHITFNTNDVPVDLSLV-----------QAMLRIYKQPSLVDRRANFTVSVYRKL 174
            :..||.  |.:.:|:..:|..:||..:           :|:|.:|.:..   :|.|....:..|:
Zfish   203 QENQLC--LQLKVTYGKSDTEIDLKQLGFHRHSRTQQERAILVVYTRSK---KRENLFNEMKEKI 262

  Fly   175 DNRQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVT 239
            .:|.|           ...:...|:|            |..:||                     
Zfish   263 KSRGD-----------DDEEESALQF------------KARRRR--------------------- 283

  Fly   240 PQASRTSLEPFIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLN 304
                ||:|                 .....||..:|.::                    .|.:..
Zfish   284 ----RTAL-----------------NNRHGKRHGKKSKS--------------------RCSKKA 307

  Fly   305 FTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPH-LPKPCCVPT 368
            ..|:||||...:|:|||..:|||.|.|.|:|||.:.:..|||||:||||:...|: .|..|||||
Zfish   308 LHVNFKELGWDDWIIAPLDYEAYHCEGVCDFPLRSHLEPTNHAIIQTLMNSMDPNSTPPSCCVPT 372

  Fly   369 VLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            .|..|:||...:.:.:...:|:..|.::|||
Zfish   373 KLSPISILYIDSGNNVVYKQYEDMVVEQCGC 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 42/236 (18%)
TGFB 300..400 CDD:214556 44/101 (44%)
gdf6aNP_001153466.1 TGFb_propeptide 57..245 CDD:279078 37/173 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..304 13/125 (10%)
TGFB 308..404 CDD:214556 43/96 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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