DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and bmp10

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001124072.1 Gene:bmp10 / 562533 ZFINID:ZDB-GENE-060526-211 Length:485 Species:Danio rerio


Alignment Length:451 Identity:102/451 - (22%)
Similarity:165/451 - (36%) Gaps:157/451 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 RPRRQAEPNLHNSASK-----FLLEVYNEISEDQE--PKEVLHQRHKRSLDDDILISNEDRQEIA 108
            ||...|    |..|::     ::||:||..:.|:.  |...:.:..|          |||    :
Zfish    89 RPSSPA----HQGATRVEPPEYMLELYNRFANDRTAMPSANIIRSFK----------NED----S 135

  Fly   109 SCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSVYRK 173
            |..|:.....|..|          :.||.: :|....:..|.||:|   :||....|....|.||
Zfish   136 SSYSMGPSGVRRHP----------LLFNVS-IPHHERVTTAELRLY---TLVQTDRNKYAGVDRK 186

  Fly   174 LDNRQDFSYRILGSVNTTSSQ--RG----------------------------WLEFNLTDTLRY 208
            :   ..:..::|   .|.|||  ||                            |..|::|..:..
Zfish   187 V---TIYEVKLL---ETNSSQQVRGDDVDGGDQASKTELVELASRQVYGTDNAWESFDMTAAVHL 245

  Fly   209 WLHNK-GLQRRNELRISIGDSQ-------LSTFAAG----------------------------- 236
            |..:. |...:.|:.|:..|||       :|....|                             
Zfish   246 WRKSDYGTTHKLEVHIASLDSQSVAEGENISNAIGGDMDIDTSPEDKHKPLMIVYSDDQSRDHRG 310

  Fly   237 -------LVTPQASRTSLEPFI----------VGYFNGPE--------LLVKIQKLRFKRDLEKR 276
                   |:..:.:|..|:..:          :|..:|.|        ||.....|.:......|
Zfish   311 AKRELNELIQHETNRPGLQDNLELEMTGLWGDLGQKDGIEEDEQSEEALLQMRSNLIYDTASRIR 375

  Fly   277 RAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKM 341
            |...|:                .|::.:..||||::...:|::||..:||:.|.|.|.:||...:
Zfish   376 RNAKGN----------------QCKKSSLYVDFKDIGWDSWILAPTGYEAFECTGVCTYPLTKDV 424

  Fly   342 NATNHAIVQTLMHLKQPH-LPKPCCVPTVLGAITILRYLNED--IIDLTKYQKAVAKECGC 399
            ..|.||::|||:.||.|. :.:.|||||.|..|::| ||::.  :....|::..|..:|||
Zfish   425 TPTKHAVIQTLVSLKSPQVVSRACCVPTELDPISLL-YLDDAGVVTYQYKFEGMVVAKCGC 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 54/293 (18%)
TGFB 300..400 CDD:214556 39/103 (38%)
bmp10NP_001124072.1 TGFb_propeptide 75..300 CDD:279078 51/248 (21%)
TGF_beta 381..484 CDD:278448 37/119 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.