DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and bmp4

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001017034.2 Gene:bmp4 / 549788 XenbaseID:XB-GENE-483058 Length:400 Species:Xenopus tropicalis


Alignment Length:391 Identity:107/391 - (27%)
Similarity:175/391 - (44%) Gaps:78/391 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RRQAEPN-LHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSL-------DDDIL--ISNE-DRQE 106
            ||.|:.| |.......||:::......|..|:|:...:.|.|       ::|.|  ||.| ..:.
 Frog    43 RRSAQSNELLRDFEVTLLQMFGLRKRPQPSKDVVVPAYMRDLYRLQSAEEEDELHDISMEYPERP 107

  Fly   107 IASCNSILTFSSRLKPEQLDNELD---MHITFNTNDVPVDLSLVQAMLRIYKQ-----PSLVD-- 161
            .:..|::.:|......|.|.:..:   ....||.:.:|.:..:..|.||:|::     |:..:  
 Frog   108 TSRANTVRSFHHEEHLENLPSTAENGNFRFVFNLSSIPENEVISSAELRLYREQIDHGPAWEEGF 172

  Fly   162 RRAN-------FTVS---VYRKLDNRQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQ 216
            .|.|       .|.|   :.|.||.|       |...|.|.    |..|:::..:..|..:|  |
 Frog   173 HRINIYEVMKPITASGHMISRLLDTR-------LIHHNVTQ----WESFDVSPAIIRWTRDK--Q 224

  Fly   217 RRNELRISIGD-SQLSTFAAGLV------TPQ--ASRTSLEPFIVGYFN---GPELLVKIQKLRF 269
            ..:.|.|.:.. :|..|:....|      .||  |..:.:.|.::.:.:   |..|     ..|.
 Frog   225 INHGLAIEVVHLNQTKTYQGKHVRISRSLLPQEDADWSQMRPLLITFSHDGRGHAL-----TRRS 284

  Fly   270 KRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCN 334
            ||..:::|.               .:..:.|.|.:..|||.::..::|::||..::|::|.|.|.
 Frog   285 KRSPKQQRP---------------RKKNKHCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCP 334

  Fly   335 FPLGTKMNATNHAIVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNE-DIIDLTKYQKAVAKECG 398
            |||...:|:|||||||||::.....:||.|||||.|.||::| ||:| |.:.|..||:.|.:.||
 Frog   335 FPLADHLNSTNHAIVQTLVNSVNSSIPKACCVPTDLSAISML-YLDEYDKVVLKNYQEMVVEGCG 398

  Fly   399 C 399
            |
 Frog   399 C 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 54/240 (23%)
TGFB 300..400 CDD:214556 47/101 (47%)
bmp4NP_001017034.2 TGFb_propeptide 40..271 CDD:366248 54/240 (23%)
TGF_beta_SF 294..400 CDD:394804 47/107 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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