DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and tgfb3

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_919367.2 Gene:tgfb3 / 369195 ZFINID:ZDB-GENE-030723-4 Length:410 Species:Danio rerio


Alignment Length:461 Identity:97/461 - (21%)
Similarity:162/461 - (35%) Gaps:120/461 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGDRPRRQAEPNLHNSAS 65
            :|.|..|.|:..:.|.:|..|.:  |: .|.:||..:.:.:::..|.|...|:            
Zfish     7 LLFVLLLNSVTMSLSLSTCTTVD--ID-NIKKKRVEAIRGQILSKLRLTSPPQ------------ 56

  Fly    66 KFLLEVYNEISEDQEPKEVLH-QRHKRSLDDDILISNEDRQEIASCNSILTFSSRLKPEQLDNEL 129
                    .:...|.|.:||. ....|.|.|..   .:||.:  ||....|.:.....|      
Zfish    57 --------TLGPSQVPYQVLALYNSTRDLLDGF---GKDRHQ--SCGQDNTETEYYAKE------ 102

  Fly   130 DMHITFN-------TNDVP------------VDLSLVQ--------AMLRIYKQPSLVDRRANFT 167
             :| .||       .||:|            .|:|:::        |..|..:.|:|...|....
Zfish   103 -IH-KFNMIQGSPENNDLPYCPKGITSKVFRFDVSIMEKNASNLFRAEFRALRMPNLSTSRTEQR 165

  Fly   168 VSVYRKLDNRQD---FSYRILGSVNT-TSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISIGDS 228
            :.:|:.|  |.|   ...|.:|..|. ......|:.|::|:|:|.||.|:......|:.:   ..
Zfish   166 IELYQIL--RPDEHIGKQRYIGRKNVMIGGTDEWVSFDVTETVREWLTNRATNLGLEISV---HC 225

  Fly   229 QLSTFAAGLVTPQASRTSLEPFIVGY---FNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPP 290
            ...||.......:....:||....|.   .:||   ::....|.|:..|:..          |..
Zfish   226 PCHTFRPNGEIIENVNEALEVKFRGMDVEDDGP---IRSDMGRLKKPKEQNL----------PHL 277

  Fly   291 VDLYRPP--------------------------QSCERLNFTVDFKELHMHNWVIAPKKFEAYFC 329
            :.:..||                          ::|......:||::.....|:..||.:.|.||
Zfish   278 ILMMLPPHRLDVLPTSRRRKRALDTKYCFSNYEENCCVRKLYIDFRQDLGWRWIHEPKGYHANFC 342

  Fly   330 GGGCNFPLGTKMNATNHAIVQTLMHLKQPHL-PKPCCVPTVLGAITILRYLNEDIIDLTKYQKAV 393
            .|.|.:   .:...|.|:.:.:|.:...|.. ..|||||..|..:|||.|:.. ...:.:....:
Zfish   343 SGPCPY---LRSADTTHSSLLSLYNTLNPEASASPCCVPQDLEPLTILYYVGR-TPKVEQLSNMI 403

  Fly   394 AKECGC 399
            .|.|.|
Zfish   404 VKSCKC 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 49/246 (20%)
TGFB 300..400 CDD:214556 28/101 (28%)
tgfb3NP_919367.2 TGFb_propeptide 22..228 CDD:279078 51/246 (21%)
TGF_beta 311..409 CDD:278448 27/101 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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