DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and tgfb2

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_919366.1 Gene:tgfb2 / 369194 ZFINID:ZDB-GENE-030723-3 Length:411 Species:Danio rerio


Alignment Length:456 Identity:105/456 - (23%)
Similarity:173/456 - (37%) Gaps:104/456 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNVFFLTSLFY--AASATTYVTTNNHIEMPIYQKRPLSE-QMEMIDILDLGDRPRRQAEPN---- 59
            :|::.|:.|..  .|:....::|.:.::|..::|:.:.. :.:::..|.|...|....||.    
Zfish     1 MNLYVLSLLLLLDLAAVAVSLSTCSTVDMDQFKKKRIEAIRGQILSKLKLSSPPEIYPEPEEVSR 65

  Fly    60 ----LHNSASKFLLEVYNE---ISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTFS 117
                ::||....|.|..||   ..|.|..:|..:.:....:|......:|        |.||  |
Zfish    66 GIIAIYNSTRDLLQEKANERAATCERQRSEEEYYAKEVHKIDMQPFYPSE--------NVIL--S 120

  Fly   118 SRLKPEQLDNELDMHITFNTNDVPVDLS-LVQAMLRIYKQPSLVDRRANFTVSVYRKLDNRQDFS 181
            ....|      ....:.|:.:.:..:.| ||:|.|||::..:...|.....:.:|:.|.::...|
Zfish   121 QHYYP------YFRRLMFDVSSMEKNASNLVKAQLRIFRLQNPKARVFEQRIELYQVLGHKDLTS 179

  Fly   182 --YRILGS-VNTTSSQRGWLEFNLTDTLRYWL----HNKGLQRRNELRISIGDSQLSTF--AAGL 237
              .|.:.| |..|.::..||.|::|:.:..||    .|||      .:||: .....||  :...
Zfish   180 PTQRYINSKVVRTRTEGEWLSFDVTEAVSEWLLHRDRNKG------FKISL-HCPCCTFVPSNNY 237

  Fly   238 VTPQASRTSLEPFIVG----YFNGPELLVKIQKLRFKRDLEKRRAGGGSP-------PPPPPPPV 291
            :.|..|. .||....|    :.||.:|.:      ||    |||..|.||       |.      
Zfish   238 IIPNKSE-ELETRFAGIDDSFVNGGDLKM------FK----KRRHSGQSPHLLLMLLPS------ 285

  Fly   292 DLYRPPQS--------------CER--------LNFTVDFKELHMHNWVIAPKKFEAYFCGGGCN 334
              ||....              |.|        .:..:|||:.....|:..||.:.|.||.|.|.
Zfish   286 --YRLESQHKSHRQKRALDTAFCSRNVQDNRCLRSLYIDFKKDLGWRWIHEPKGYNANFCAGACP 348

  Fly   335 FPLGTKMNATNHAIVQTLMHLKQPHL-PKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECG 398
            :.....   |.|:.:..|.:...|.. ..||||...|..:|||.|:.: ...:.:....:.|.|.
Zfish   349 YLWSAD---TQHSNILGLYNTINPEASASPCCVSQDLEPLTILYYIGK-TPKIEQLSNMIVKSCK 409

  Fly   399 C 399
            |
Zfish   410 C 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 55/239 (23%)
TGFB 300..400 CDD:214556 29/109 (27%)
tgfb2NP_919366.1 TGFb_propeptide 21..228 CDD:366248 51/229 (22%)
TGF_beta_TGFB2 314..410 CDD:381655 26/99 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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