DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and dpp

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster


Alignment Length:439 Identity:105/439 - (23%)
Similarity:176/439 - (40%) Gaps:104/439 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IEMPIYQKRPLSEQMEMIDILDLGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPK----EVLH 86
            |.:|...|..::||.......:...:.:.:.:|:......|.||.::|   ..:.||    :::.
  Fly   188 INVPANAKAIIAEQGPSTYSKEALIKDKLKPDPSTLVEIEKSLLSLFN---MKRPPKIDRSKIII 249

  Fly    87 QRHKRSLDDDILISNEDRQEI-------ASCNSILTFSSRLKPEQLDNELDMH----ITFNTNDV 140
            ....:.|..:|:....|...|       .|.|::.:|:.  |..::|:....|    :.|:...:
  Fly   250 PEPMKKLYAEIMGHELDSVNIPKPGLLTKSANTVRSFTH--KDSKIDDRFPHHHRFRLHFDVKSI 312

  Fly   141 PVDLSLVQAMLRIYK----QPSLVDR----RANFTVSVYR----KLDNRQDFSYRILGSVNTTSS 193
            |.|..|..|.|::.:    |..:..|    |..:.|.||.    .:..:::.||.:|.:..    
  Fly   313 PADEKLKAAELQLTRDALSQQVVASRSSANRTRYQVLVYDITRVGVRGQREPSYLLLDTKT---- 373

  Fly   194 QRGWLEFNLTDTLRY--------WLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPF 250
                :..|.|||:..        ||.:   .:||               .||:....:..||:| 
  Fly   374 ----VRLNSTDTVSLDVQPAVDRWLAS---PQRN---------------YGLLVEVRTVRSLKP- 415

  Fly   251 IVGYFNGPELLVKIQ--------------------------KLRFKRDLEKRRAG--GGSPPPPP 287
                  .|...|:::                          |.|..||:.....|  ||.....|
  Fly   416 ------APHHHVRLRRSADEAHERWQHKQPLLFTYTDDGRHKARSIRDVSGGEGGGKGGRNKRQP 474

  Fly   288 PPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTL 352
            ..|........:|.|.:..|||.::...:|::||..::||:|.|.|.|||....|:||||:||||
  Fly   475 RRPTRRKNHDDTCRRHSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNSTNHAVVQTL 539

  Fly   353 MHLKQP-HLPKPCCVPTVLGAITILRYLN-EDIIDLTKYQKAVAKECGC 399
            ::...| .:||.|||||.|.::.:| ||| :..:.|..||:.....|||
  Fly   540 VNNMNPGKVPKACCVPTQLDSVAML-YLNDQSTVVLKNYQEMTVVGCGC 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 46/249 (18%)
TGFB 300..400 CDD:214556 44/102 (43%)
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 46/256 (18%)
TGFB 487..588 CDD:214556 44/102 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466525
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1063560at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
65.850

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