DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and bmp4

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_571417.1 Gene:bmp4 / 30612 ZFINID:ZDB-GENE-980528-2059 Length:400 Species:Danio rerio


Alignment Length:403 Identity:102/403 - (25%)
Similarity:164/403 - (40%) Gaps:80/403 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QKRPLSEQME--MIDILDLGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLD 94
            |...|....|  ::.:..|..|||    |:......::||::|...|.:.|.....|.    |.|
Zfish    42 QSHELLRDFEATLLHMFGLQRRPR----PSHSAVVPQYLLDLYRLQSGELEEAGAQHV----SFD 98

  Fly    95 DDILISNEDRQEIASCNSILTFSSRLKPEQLDN----ELDMHITFNTNDVPVDLSLVQAMLRIYK 155
                   ...:..:..|::..|......|:|.:    |..:...||.:.:|.|..:..|.||:|:
Zfish    99 -------YPERSTSRANTVRGFHHEEHLEELQSDGSQETPLRFVFNLSSIPEDELISTAELRVYR 156

  Fly   156 Q--------PSLVDRRANFTVSVYR--KLDNRQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWL 210
            |        |..........:::|.  |.........::|.:.....:...|..|:::..:..|.
Zfish   157 QQIDDAFSDPDQTGDHGLHRINIYEVLKAPREGQLITQLLDTRLVRHNTSKWESFDVSPAVLRWT 221

  Fly   211 H----NKGL------------QRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIV--GYFNG 257
            .    |.||            |:...:|:|.....|         |......|.|.:|  |:...
Zfish   222 QEKRSNHGLAVEVVQMKRNPVQKGRHVRVSRSVHPL---------PDEEWDQLRPLLVTFGHDGK 277

  Fly   258 PELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPK 322
            ...|.:..|...|:...||.                    ::|.|....|||.::..::|::||.
Zfish   278 SHPLTRRAKRSPKQRGRKRN--------------------RNCRRHALYVDFSDVGWNDWIVAPP 322

  Fly   323 KFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNE-DIIDL 386
            .::||:|.|.|.|||...:|:|||||||||::....::||.|||||.|.||::| ||:| |.:.|
Zfish   323 GYQAYYCHGECPFPLADHLNSTNHAIVQTLVNSVNTNIPKACCVPTELSAISML-YLDETDRVVL 386

  Fly   387 TKYQKAVAKECGC 399
            ..||:.|.:.|||
Zfish   387 KNYQEMVVEGCGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 46/248 (19%)
TGFB 300..400 CDD:214556 48/101 (48%)
bmp4NP_571417.1 TGFb_propeptide 35..272 CDD:279078 48/253 (19%)
TGFB 300..400 CDD:214556 48/101 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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