DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and inhbb

DIOPT Version :10

Sequence 1:NP_524863.3 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_571143.2 Gene:inhbb / 30275 ZFINID:ZDB-GENE-990415-2 Length:393 Species:Danio rerio


Alignment Length:361 Identity:85/361 - (23%)
Similarity:133/361 - (36%) Gaps:96/361 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 PNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDI---------LISNEDRQEIASCNSI 113
            |||...|:      :||:.|  |..|::    ..:..||:         |||||..|.:....:.
Zfish   109 PNLDGHAA------HNEVQE--ETSEII----SFAESDDVTPSKSSLYFLISNEGNQNLYVLQAN 161

  Fly   114 LTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSVYRKLDNRQ 178
            |....:|.|..|:..|                                 |...||.|:......|
Zfish   162 LWLYFKLMPGTLEKGL---------------------------------RRKVTVRVHSYEPGGQ 193

  Fly   179 DFSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQAS 243
            :..:.:: .......:.||..|.:::.:|..|...|  ||.:|.|.....:.:.....||.|  |
Zfish   194 NVHWPMM-EKRVELKRSGWHTFPVSEAIREMLAKGG--RRQDLDIHCEGCEAANVLPILVDP--S 253

  Fly   244 RTSLEPFIVGYFNGPELLVKIQ------KLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCER 302
            ..|..||:|         |:.|      ::| ||.||.....||                 .|.|
Zfish   254 DPSHRPFLV---------V
RAQQADGKHRIR-KRGLECDGNNGG-----------------LCCR 291

  Fly   303 LNFTVDFKELHMHNWVIAPKKFEAYFCGGGC-NFPLGTKMNATN-HAIV--QTLMHLKQPHLPKP 363
            ..|.:||:.:..::|:|||..:...:|.|.| .:..|...:|:: |..|  |..|....|.....
Zfish   292 QQFYIDFRLIGWNDWIIAPAGYYGNYCEGSCPAYMAGVPGSASSFHTAVVNQYRMRGMSPGSVNS 356

  Fly   364 CCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            ||:||.|..:::|.:.:|..|........:.:||||
Zfish   357 CCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGC 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_524863.3 TGFb_propeptide 39..254 CDD:480997 45/204 (22%)
TGF_beta_BMP5_like 299..400 CDD:381639 31/105 (30%)
inhbbNP_571143.2 TGFb_propeptide 54..263 CDD:480997 45/212 (21%)
TGF_beta_INHBB 287..393 CDD:381675 32/123 (26%)

Return to query results.
Submit another query.