DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and Gdf6

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_038554.1 Gene:Gdf6 / 242316 MGIID:95689 Length:454 Species:Mus musculus


Alignment Length:497 Identity:124/497 - (24%)
Similarity:179/497 - (36%) Gaps:148/497 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPL----SEQMEMIDILDLGDR--------PR 53
            :|...||.|..:              ::|.:|:..:    |...|:....|:|:|        |:
Mouse     7 LLWAIFLISFLW--------------DLPGFQQASISSSSSSSTELDSTKDVGNRKEGKMQRTPQ 57

  Fly    54 RQAE---PNLHNSASKFLLEVYNEISEDQEP-----KEVLHQR----HKR-SLDDDILISNEDRQ 105
            ..||   |..|....|.|........:.|||     :.|.|:.    :|. |:.:.:.|:....|
Mouse    58 ESAEGRTPPEHGLRQKDLRRRPPGQHQGQEPPGRGLRVVPHEYMLSIYKTYSIAEKLGINASFFQ 122

  Fly   106 EIASCNSILTFSSRLKPEQLDNELD--MHITFNTNDVPVDLS-------LVQAMLRIYKQ----- 156
            ...|.|:|.:|        :|..||  .|..........|:|       ||.|.||:|:|     
Mouse   123 SSKSANTITSF--------VDRGLDDLSHTPLRRQKYLFDVSTLSDKEELVGAELRLYRQAPPTP 179

  Fly   157 -----------------PSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGWLEFNLTD 204
                             |.|:|.|.         ||.:             ..:|.||..|::..
Mouse   180 WGLPARPLHLQLFPCLSPLLLDART---------LDPQ-------------GPTQAGWEVFDVWQ 222

  Fly   205 TLR--YWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIVGY---FNGPE---LL 261
            .||  .|     .|...|||.:.|:.......|....|| ....|:...:|:   ...|:   ||
Mouse   223 GLRPQPW-----KQLCLELRAAWGELDAGDTGARARGPQ-QPPPLDLRSLGFGRRVRPPQERALL 281

  Fly   262 VKIQKLRFKR----------DLEKRRAGGGSPPPPPPPPVDLYRPPQS----------------- 299
            |...:.:.|.          ..|...|.|..|.|...|....:.|...                 
Mouse   282 VVFTRSQRKNLFTEMHEQLGSAEAAGAEGSWPAPSGSPDAGSWLPSPGRRRRRTAFASRHGKRHG 346

  Fly   300 ------CERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQP 358
                  |.|....|:||||...:|:|||.::|||.|.|.|:|||.:.:..|||||:||||:...|
Mouse   347 KKSRLRCSRKPLHVNFKELGWDDWIIAPLEYEAYHCEGVCDFPLRSHLEPTNHAIIQTLMNSMDP 411

  Fly   359 -HLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
             ..|..|||||.|..|:||.....:.:...:|:..|.:.|||
Mouse   412 GSTPPSCCVPTKLTPISILYIDAGNNVVYKQYEDMVVESCGC 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 59/268 (22%)
TGFB 300..400 CDD:214556 45/101 (45%)
Gdf6NP_038554.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..93 15/64 (23%)
TGFb_propeptide 75..284 CDD:279078 54/244 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..268 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 303..350 7/46 (15%)
TGF_beta 352..453 CDD:278448 43/100 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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