DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and daf-7

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_497265.1 Gene:daf-7 / 175237 WormBaseID:WBGene00000903 Length:350 Species:Caenorhabditis elegans


Alignment Length:419 Identity:86/419 - (20%)
Similarity:158/419 - (37%) Gaps:97/419 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNVF-FLTSLFYAASATTYVTTNNHIEM-PIYQKRPLSEQMEMIDILDLGDRPR--RQAEPNLHN 62
            |.|| ||.||   ....|:..||:.:.: .:.|.|....:.|::|.|::.:.|:  :..:|.:  
 Worm     7 LPVFIFLLSL---PHGLTFNCTNSGVCIEKMKQHRTEYLKNEILDQLNMKEAPKGLKPMDPEM-- 66

  Fly    63 SASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTF---SSRLKPEQ 124
              ....||:|.::.|                        :|.|::....|..|.   |....|.|
 Worm    67 --KSVYLEMYRDLLE------------------------KDEQDMGVEMSFYTAKDPSYGENPSQ 105

  Fly   125 LDNELDMHITFNTNDVPVDLSLVQAMLRI-----YKQPSLVDRRANFTVSVYRKLDNRQDFSYRI 184
            |..:.|:     |||:... .::||.|.:     .|...::.   :..|.||.|.::........
 Worm   106 LVAKFDV-----TNDLERS-DILQATLTVSIEIPAKDSGMLQ---DVQVQVYEKNEDGSMGEMVT 161

  Fly   185 LGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEP 249
            .|...|..|:|..::..: ||::.|.....:|              ..|...::  .....:|.|
 Worm   162 SGIFATKGSERISIQLPI-DTVKSWFTISPIQ--------------GIFVKAML--DGRNVALHP 209

  Fly   250 FIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHM 314
                    .:....:..:|.:  |..|..|.........|..:.....:.|...:..::|:::..
 Worm   210 --------QQTTADVDNMRLQ--LSTRPKGSRKRRSHAKPVCNAEAQSKGCCLYDLEIEFEKIGW 264

  Fly   315 HNWVIAPKKFEAYFCGGGCNFPLGTKMNA-------TNHAIVQTLMH-LKQPHLPKPCCVPTVLG 371
             :|::||.::.||.|.|.|::      ||       |.|:.:....| :..|.:.. ||.||...
 Worm   265 -DWIVAPPRYNAYMCRGDCHY------NAHHFNLAETGHSKIMRAAHKVSNPEIGY-CCHPTEYD 321

  Fly   372 AITILRYLNED-IIDLTKYQKAVAKECGC 399
            .|.:: |:|.| .:.:......:||:|||
 Worm   322 YIKLI-YVNRDGRVSIANVNGMIAKKCGC 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 40/224 (18%)
TGFB 300..400 CDD:214556 29/109 (27%)
daf-7NP_497265.1 TGFB 250..350 CDD:214556 29/109 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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