DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and Inha

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_034694.3 Gene:Inha / 16322 MGIID:96569 Length:366 Species:Mus musculus


Alignment Length:293 Identity:60/293 - (20%)
Similarity:91/293 - (31%) Gaps:112/293 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 FSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRN----------------------ELR 222
            |:|....|.:..|.|        ..:.:.|.|. ||.|::                      .:.
Mouse   112 FTYVFRPSQHIRSHQ--------VTSAQLWFHT-GLGRKSTAAANSSAPLLDLLVLSSGGPMAVP 167

  Fly   223 ISIGDS-------QLSTFAAGLVT----------PQAS---RTSLEPFIVGYFNGPELLVKIQKL 267
            :|:|..       .|:..|..|:|          |..|   |....||:|.:          .:.
Mouse   168 VSLGQGPPRWAVLHLAASAFPLLTHPILVLLLRCPLCSCSGRPETTPFLVAH----------TRA 222

  Fly   268 RFKRDLEKRRAGGGSPPPPPPPPV--DLYRPPQS------CERLNFTVDFKELHMHNWVIAPKKF 324
            |.....|:.|....|.|.|..|..  .|.|||:.      |.|....:.|:||....|::.|..|
Mouse   223 RAPSAGERARRSTPSVPWPWSPAALRLLQRPPEEPAAHAFCHRAALNISFQELGWDRWIVHPPSF 287

  Fly   325 EAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPHLP-------------KPCCVPTVLGAITIL 376
            ..::|.|.|..|...             :.|..|.:|             ||||. .:.|::..|
Mouse   288 IFHYCHGSCGMPTSD-------------LPLPVPGVPPTPVQPLFLVPGAKPCCA-ALPGSMRSL 338

  Fly   377 RYLNEDIIDLT-------KYQ---KAVAKECGC 399
            |      :..|       ||:   ..:.:.|.|
Mouse   339 R------VRTTSDGGYSFKYEMVPNLITQHCAC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 22/115 (19%)
TGFB 300..400 CDD:214556 27/123 (22%)
InhaNP_034694.3 TGF_beta 263..366 CDD:295336 27/123 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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