DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and Gdf9

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_032136.2 Gene:Gdf9 / 14566 MGIID:95692 Length:441 Species:Mus musculus


Alignment Length:446 Identity:91/446 - (20%)
Similarity:157/446 - (35%) Gaps:141/446 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VFFLTSLF--YAASATTYVTTNNHIEMPIYQKRPLSEQ-----------MEMIDILDLGDRPRRQ 55
            ::::..|:  ||........:.:|:...:....|.::|           :.|:|:|...||....
Mouse    86 LYYMKKLYKTYATKEGVPKPSRSHLYNTVRLFSPCAQQEQAPSNQVTGPLPMVDLLFNLDRVTAM 150

  Fly    56 AE-------PNLHNSASKFL-------LEVYNEISEDQEPKEVLH----QRHKRSLDDDILISNE 102
            ..       ..|:||||...       |.|...:|..:.|....:    ::| |.::.|:     
Mouse   151 EHLLKSVLLYTLNNSASSSSTVTCMCDLVVKEAMSSGRAPPRAPYSFTLKKH-RWIEIDV----- 209

  Fly   103 DRQEIASCNSILTFSSRLKPEQLDNELDMHITFN---TND-VPVDLSLVQAMLRIYKQPSLVDRR 163
                          :|.|:|....:|..:|::.|   |.| ||.| .:....|.:  .|||:   
Mouse   210 --------------TSLLQPLVTSSERSIHLSVNFTCTKDQVPED-GVFSMPLSV--PPSLI--- 254

  Fly   164 ANFTVSVYRKLDNRQDFSYRILGSVNTTSSQ--RGWLEFNLTDTLRYWLH--NKGLQRR--NELR 222
                  :|                :|.||:|  ..|.  :|..|.|...|  ..|:..|  .|..
Mouse   255 ------LY----------------LNDTSTQAYHSWQ--SLQSTWRPLQHPGQAGVAARPVKEEA 295

  Fly   223 ISI--------GDSQLSTFAAGLVTPQASRTSLEPFIVGYFNGPELLVKIQKLRFKRDLEKRRAG 279
            |.:        |...:.:.|.|            |.:...||..|.        ||:.|      
Mouse   296 IEVERSPRRRRGQKAIRSEAKG------------PLLTASFNLSEY--------FKQFL------ 334

  Fly   280 GGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNAT 344
                           .|...||..:|.:.|.:|...||::||.::...:|.|.|...:..:..:.
Mouse   335 ---------------FPQNECELHDFRLSFSQLKWDNWIVAPHRYNPRYCKGDCPRAVRHRYGSP 384

  Fly   345 NHAIVQTLMHLK-QPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            .|.:||.:::.| .|.:|:|.|||.....:::|....:..|...:|:..:|..|.|
Mouse   385 VHTMVQNIIYEKLDPSVPRPSCVPGKYSPLSVLTIEPDGSIAYKEYEDMIATRCTC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 51/261 (20%)
TGFB 300..400 CDD:214556 28/101 (28%)
Gdf9NP_032136.2 TGF_beta_GDF9 336..441 CDD:381673 29/105 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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