DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and admp

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_571951.2 Gene:admp / 140619 ZFINID:ZDB-GENE-011214-1 Length:391 Species:Danio rerio


Alignment Length:425 Identity:111/425 - (26%)
Similarity:194/425 - (45%) Gaps:68/425 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LTSLFYAASATTYVTTNNHIEMPIYQKRP--LSEQMEMIDILDLGDRPRRQAEPNLHNSASKFLL 69
            |:::|:|..:|.         |.:...||  .:|..|.:.:         ::||.:.:.|.:.||
Zfish     2 LSAMFFAMLSTM---------MGLSFARPGFFNELEEHLAV---------ESEPKVRSEAIRRLL 48

  Fly    70 EVYNEISED-------QEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTFSSRLKPEQLDN 127
            ||:.  .||       ::|.:.:...:....|.|.:..:   ..:...|::.:|..:|..|::: 
Zfish    49 EVFG--MEDPPAALGHKQPPQYMLDLYNTIADVDGVTKD---PTLLEGNTVRSFFDKLHSERIE- 107

  Fly   128 ELDMHITFNTNDVPVDLSLVQAMLRIYK---QPSLVDRRANF-TVSVYRKLD-NRQDFSY--RIL 185
                 ..||.:.|.....::.|.|.::|   :.|:|..|.:| .||||:.|| ::::.|.  ::|
Zfish   108 -----YLFNMSTVAKSEKILTAELHLFKLRPKTSIVLNRHHFCQVSVYQVLDSSKKNVSQGKKLL 167

  Fly   186 GSVNTTSSQRGWLEFNLTDTLRYWLHNKG-----LQRRNELRISIGDSQLSTFAAGLVTPQASRT 245
            .|........||..|.:|..:|.|:.::|     |.....|..|..|.::..||:|    :....
Zfish   168 SSRLVPIHSTGWEVFTITQAVRSWMSDEGSNLGLLVSVRTLAGSQMDLKMVRFASG----RDHHH 228

  Fly   246 SLEPFIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPP---------PVDLYRPPQSCE 301
            |.:|.:|.:.:.......::......|:.   .||.|.|.|..|         ..|......:|:
Zfish   229 SKQPMLVLFTDDGRRAASLEATSKGSDVS---PGGSSQPLPSVPASRRSSRSVDYDERGEKMACQ 290

  Fly   302 RLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMH-LK-QPHLPKPC 364
            |....|||:|:....|:::||.:.||.|.|.|.|||...|..|||||||:::: || ...:..||
Zfish   291 RQPLYVDFEEIGWSGWIVSPKGYNAYHCKGSCIFPLSQNMRPTNHAIVQSIINTLKLNKGIQTPC 355

  Fly   365 CVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            |||..|.:|::|.:.:::.:.|.:|...||..|||
Zfish   356 CVPDKLYSISLLYFDDDENVVLKQYDDMVAGSCGC 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 53/233 (23%)
TGFB 300..400 CDD:214556 42/102 (41%)
admpNP_571951.2 TGFb_propeptide 40..237 CDD:279078 50/211 (24%)
TGFB 289..391 CDD:214556 42/102 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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