DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and bmp3

DIOPT Version :10

Sequence 1:NP_524863.3 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:XP_002934044.1 Gene:bmp3 / 100497890 XenbaseID:XB-GENE-483484 Length:458 Species:Xenopus tropicalis


Alignment Length:462 Identity:103/462 - (22%)
Similarity:166/462 - (35%) Gaps:153/462 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 GDRPRRQ--AEPNLHNSASKFLLEVYNEI-SEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASC 110
            ||..|.:  |.| |.::.|:.:|.:|::. |.....:|.|  ||::.|.|.              
 Frog    38 GDAARHEEAAFP-LRDTVSEHMLRLYDKYRSGGARARESL--RHRQPLPDG-------------- 85

  Fly   111 NSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVD-------------- 161
            |::.:|    :....|.....|..||...:....:::.|.|..|....|..              
 Frog    86 NTVRSF----RAMDGDEHKKCHHMFNLTSLTSSENILSATLHYYLGDLLNSSHRCPHSQFCTQHG 146

  Fly   162 -RRANFTVSV----YRKLDNRQDFSYRILGS--VNTTSSQRG-----W----------------- 197
             .:..||:.:    :..|.|    ...|:|.  :|.::|.|.     |                 
 Frog   147 HAKTEFTLFLTVWSFTALQN----PAHIIGHFLINVSASHRDLPLWQWKDITQAVRKAKEYGEAV 207

  Fly   198 LEFNLTDTLRYWLHNK----GLQ-----RRNELRISIGDSQLSTFAAGLVTP------------- 240
            |.||||..|..  |..    ||:     ..|:..||..||.:|:. .|..||             
 Frog   208 LGFNLTIELPN--HRSVEVLGLKPYILVYANDSAISEPDSVVSSL-HGPHTPLTLKPNRKIEKAE 269

  Fly   241 ---QASRTSLEPFIVGYFNGPELLV------------------------------------KIQK 266
               :.|...|.|.......|.|...                                    |.|.
 Frog   270 QRKKRSTDILLPLQNNELPGAEYQYSVDEEGWEERKPYKTFQGRQNEKDKNKKKLRKSNRQKSQT 334

  Fly   267 LRF-KRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCG 330
            |:| ::.|:|.|.             ..:..|::|.|....|||.::....|:|:||.|:||:|.
 Frog   335 LQFDEQTLKKARR-------------KQWNEPRNCARRYLKVDFADIGWSEWIISPKSFDAYYCS 386

  Fly   331 GGCNFPLGTKMNATNHAIVQTLMHL--KQPHLPKPCCVPTVLGAITILRYLNED-IIDLTKYQKA 392
            |.|.||:...:..:|||.:|:::..  ..|.:|:|||||..:.:::|| :|:|: .:.|..|...
 Frog   387 GACQFPMPKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSLSIL-FLDENKNVVLKVYPNM 450

  Fly   393 VAKECGC 399
            ..:.|.|
 Frog   451 TVESCAC 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_524863.3 TGFb_propeptide 39..254 CDD:480997 57/275 (21%)
TGF_beta_BMP5_like 299..400 CDD:381639 36/104 (35%)
bmp3XP_002934044.1 TGF_beta_BMP3 349..458 CDD:381663 37/110 (34%)

Return to query results.
Submit another query.