DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and nodal

DIOPT Version :10

Sequence 1:NP_524863.3 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:XP_002936396.2 Gene:nodal / 100497218 XenbaseID:XB-GENE-483209 Length:398 Species:Xenopus tropicalis


Alignment Length:371 Identity:78/371 - (21%)
Similarity:149/371 - (40%) Gaps:66/371 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FLLEVY-----NEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILT----FSSRLKP 122
            ::|.:|     :|:|...|........|:..:...:...:.|..     .|:.|    ||| |..
 Frog    55 YMLNLYQSFHHSELSHGMEAAPSPPSNHRSDIIRSLAAKSFDHG-----GSLWTLVFDFSS-LSQ 113

  Fly   123 EQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSVYRKLDNRQDFSY--RIL 185
            ::.....::...|...|..: ::.::.|:..:.|.|...:             |.|.:.|  .|.
 Frog   114 DEEHQFAEVRFDFRVFDGAI-VAGMEVMVDFFHQSSTCQK-------------NSQSYLYVGSIT 164

  Fly   186 GSVNTTSSQRGWLEFNLTDTLRYWL------------HNKGLQR--------RNELRISIGDSQL 230
            |::.:.||:. |:....||.:..|.            |.|.|::        |...:.:..|.|:
 Frog   165 GTLRSRSSET-WVMLEATDIIHKWFEKDEKGKNNSEAHVKQLEKLARAKSAERRYQQQNTEDRQI 228

  Fly   231 STFAAGLVTPQASRTSLEPFIVGYFNGPELLVK--IQKL----RFKRDLEKRRAGGGSPPPPPPP 289
            .......::.:...:.....:....:...|.|.  ||.:    |.:|....:...|....|....
 Frog   229 LMMVYSNISKKERLSGTATLLQDAAHSKYLTVMPGIQTISNSRRHRRSHIFKEHMGMKHVPTAGS 293

  Fly   290 PVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLM- 353
            ...|      |.|::|.||||::...:|:|.|:|:.||.|.|.|..|:...:...|||.:|:|: 
 Frog   294 SRTL------CRRVDFFVDFKQIGWDSWIIHPQKYNAYRCEGECPSPVNESVKPNNHAYMQSLLN 352

  Fly   354 HLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            :..:...|:.||||..:.:::::.|.::||. ...::..:.:||||
 Frog   353 YYAKGKAPEVCCVPIRMSSLSMVYYDHDDIA-FQNHEGMIVEECGC 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_524863.3 TGFb_propeptide 39..254 CDD:480997 35/217 (16%)
TGF_beta_BMP5_like 299..400 CDD:381639 34/102 (33%)
nodalXP_002936396.2 TGF_beta_NODAL 296..398 CDD:381637 35/109 (32%)

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