DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and gdf7

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:XP_002934530.1 Gene:gdf7 / 100496775 XenbaseID:XB-GENE-484925 Length:414 Species:Xenopus tropicalis


Alignment Length:390 Identity:96/390 - (24%)
Similarity:150/390 - (38%) Gaps:103/390 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 KFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTFSSR----LKPEQLD 126
            :::|.:|..:|..:      |:...||     ...|..|     .|:|.:|..:    |.|:..:
 Frog    71 EYMLALYKSLSGTE------HRELGRS-----TARNRSR-----ANTITSFVDQGHDDLPPQPPE 119

  Fly   127 NELDMHITFNTNDVPVDLSLVQAMLRI----------------------------YKQPSLVDRR 163
            .:    ..|:|..:|....:|.|.|||                            :::|.|:|.|
 Frog   120 QK----FLFDTRSLPERDEIVGAELRILRRFPLDASSISGLGSLVHLNLYTCPTGWQEPKLIDSR 180

  Fly   164 ANFTV----------SVYRKLDNRQ------DFSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHN 212
            :...:          :|::.|.||:      .|..:|:..:..|:.|...:.|:......   |.
 Frog   181 SADLLDTVFSKWEVFNVWKALGNRRLSGETLCFMLKIVSDIKATAFQPVQMGFSREGQQP---HE 242

  Fly   213 KGL-------QRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIVGYFNGPELLVKIQKLRFK 270
            |.|       :||..|...|.|.         :....:...|||...|.       ..|.|.|.|
 Frog   243 KALLVVSSHSKRRENLFKEIRDK---------IKSMGNPKFLEPPDSGQ-------QSIPKRRRK 291

  Fly   271 RDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNF 335
            |.....|...|.....        :....|.:....|:||||...:|:|||..:|||.|.|.|:|
 Frog   292 RTTLPTRTNNGKGQGK--------KSKTRCSKKPLHVNFKELGWDDWIIAPLDYEAYHCEGVCDF 348

  Fly   336 PLGTKMNATNHAIVQTLMHLKQPH-LPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            ||.:.:..|||||:||||:...|. .|..||||:.|..|:||...:.:.:...:|:..|.:.|||
 Frog   349 PLRSHLEPTNHAIIQTLMNSMDPESTPPSCCVPSKLSPISILYIDSGNNVVYKQYEDMVVESCGC 413

  Fly   400  399
             Frog   414  413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 45/242 (19%)
TGFB 300..400 CDD:214556 43/101 (43%)
gdf7XP_002934530.1 TGFb_propeptide 63..215 CDD:366248 30/163 (18%)
TGF_beta_GDF5_6_7 313..414 CDD:381644 43/101 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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