DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and bmp8

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:XP_002941697.3 Gene:bmp8 / 100494880 XenbaseID:XB-GENE-485424 Length:425 Species:Xenopus tropicalis


Alignment Length:431 Identity:120/431 - (27%)
Similarity:211/431 - (48%) Gaps:62/431 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LTSLFYAASATTYVTTNNHIEMPIYQKRPLS------EQMEMIDILDLGDRPRRQAEPNLHNSAS 65
            :.::.:..::.::|  .||:.....| |.||      .|.|::.|:.|..|||..:..::.:||.
 Frog    20 ILAILWDLTSGSFV--KNHLHSSFIQ-RKLSGREKREMQREILSIMGLPGRPRPASGGHVPSSAP 81

  Fly    66 KFLLEVYNEI--SEDQEPKEVLHQRHKRSLDDD-----ILISNEDRQEIASCNSILTFSSRLKPE 123
            .|:|::|:.:  .||::....:.:.|..:|...     .:||..|        ::::|.:     
 Frog    82 LFMLDLYHAMCSEEDEDGMPGVSRAHFTTLSTQSPPLGTVISEAD--------TVMSFVN----- 133

  Fly   124 QLDNELDM--------HITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSV----YRKLDN 176
            .::::.|:        ...|:...:|...|:..|..|::|..|.: |..|.|:.:    .:|...
 Frog   134 MVEHDRDIFQQKPYWKEFKFDMTQIPTGESVTVAEFRLFKMRSFL-RNLNRTLHISLFEIKKERG 197

  Fly   177 RQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISI------GDSQLSTFAA 235
            .::....:|...:|.:...|||.|::|....:||    |..:|.|.|.:      |.| :....|
 Frog   198 HREPELTLLDHESTLAGDEGWLVFDVTAASNHWL----LNSKNNLGIRLYVETDQGQS-IDPGIA 257

  Fly   236 GLVTPQASRTSLEPFIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPP-----VDLYR 295
            |::..:|.| |.:||:|.:|....  .:|:..|..:.|.||:......|.|...|     :.:..
 Frog   258 GILGRRAPR-SKQPFMVTFFRVSR--NQIRSARAVKQLRKRQQKKHDLPHPNKLPGILDHLHVTD 319

  Fly   296 PPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPH- 359
            ..|.|:|....|.|::|...:|||||:.:.|::|.|.|:|||.:.||||||||:|:|:||.:|. 
 Frog   320 SRQVCKRHELYVSFRDLGWLDWVIAPQGYSAFYCEGECSFPLDSCMNATNHAILQSLVHLMKPES 384

  Fly   360 LPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGCH 400
            :||.||.||.|.|.::|.|.:.:.:.|.|::..|.|.||||
 Frog   385 VPKACCAPTKLSATSVLYYDSNNNVILKKHRNMVVKSCGCH 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 55/239 (23%)
TGFB 300..400 CDD:214556 46/100 (46%)
bmp8XP_002941697.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1063560at2759
OrthoFinder 1 1.000 - - FOG0000576
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.020

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