DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and bmp10

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:XP_002935357.1 Gene:bmp10 / 100487047 XenbaseID:XB-GENE-478875 Length:421 Species:Xenopus tropicalis


Alignment Length:427 Identity:107/427 - (25%)
Similarity:170/427 - (39%) Gaps:112/427 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 YQKRPLSEQM--EMIDILDLGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSL 93
            |....|.|.|  :::..|:|...|   .:|.:.....:::||:||..:                 
 Frog    48 YDFNSLRETMKDDILRTLNLSGIP---VQPPVKVDPPEYMLELYNRFA----------------- 92

  Fly    94 DDDILISNEDRQEIASCNSILTFSSRLKPEQLDNELDMH---ITFNTNDVPVDLSLVQAMLRIYK 155
                    :||..:.|.|.:.:|.:........:.:.:.   :.||.: :|....||.|.|::| 
 Frog    93 --------KDRTTMPSANIVRSFKNEDFSMPYSDAMGVRRYALLFNVS-IPHHEELVMAELKLY- 147

  Fly   156 QPSLVDR-RANF-----TVSVYRKLDNRQDFSYRI-LGS--VNTTSSQRGWLEFNLTDTLRYWLH 211
              .:|.| |..|     .|:||......:|....: |.|  |..|||:  |..|::|:.:|.|..
 Frog   148 --MMVPRERMKFEGVGRKVTVYEIYSEGEDTIRAVELASRLVYKTSSE--WQMFDITEAVRRWSR 208

  Fly   212 NKGLQRRNELRISIGDSQLSTFAAG----LVTPQASRTSLEPFIV-------------------- 252
            ::....|.|:::...|..|.....|    .|.|::..   |||:|                    
 Frog   209 SEFATHRLEVQVQNPDVDLEGSGEGNLDIEVRPESKH---EPFLVVFSDDQSSDKKEEKEELEEM 270

  Fly   253 ---------------GYFNG---PELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQS 299
                           |..||   ..||.....:.:......||...|:                .
 Frog   271 ITHEEGLDQENGEDIGLGNGLSEESLLQMRSNIIYDASSRIRRNAKGN----------------Y 319

  Fly   300 CERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPH-LPKP 363
            |::....:||.|:..::|:|||:.:|||.|.|.|::||...:..|.|||||||:|:|... ..|.
 Frog   320 CKKTPLYIDFGEIGWNSWIIAPQGYEAYECRGVCSYPLTEHVTPTKHAIVQTLVHMKNAQKASKA 384

  Fly   364 CCVPTVLGAITILRYLNEDIIDLT-KYQKAVAKECGC 399
            |||.|.|..|:|| ||:..::... ||:..|..||||
 Frog   385 CCVATKLDPISIL-YLDAGVVTYKFKYEGMVVAECGC 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 52/267 (19%)
TGFB 300..400 CDD:214556 44/102 (43%)
bmp10XP_002935357.1 TGFb_propeptide 52..252 CDD:366248 54/236 (23%)
TGF_beta_BMP10 318..421 CDD:381671 44/120 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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