DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and gdf5

DIOPT Version :10

Sequence 1:NP_524863.3 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:XP_002662587.2 Gene:gdf5 / 100334210 ZFINID:ZDB-GENE-990415-39 Length:474 Species:Danio rerio


Alignment Length:430 Identity:105/430 - (24%)
Similarity:172/430 - (40%) Gaps:83/430 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AASATTYVTTNNHIEMPIYQK--RPLSEQMEMIDILDLGDRP---RRQAEPNLHNSAS------- 65
            ||:..:..:...|.:....||  .|.:.:.....|..:...|   |.::...|.||..       
Zfish    84 AANLASPSSIQQHSKAASTQKSSAPAAVRAAPAGIKSIAPAPSHLRMKSAVKLENSEEPKHPLVI 148

  Fly    66 --KFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTFSSRLKPEQLDNE 128
              .::|.:|..::.......|||                   |....|:|.:|..|.:.|:....
Zfish   149 PHDYMLSLYWSLTSGDVNTSVLH-------------------EAGMANTITSFVDRGQDERAPLL 194

  Fly   129 LDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFT--VSVYRKLDNRQDFSYRILGSVNTT 191
            ......||.:.:..: .|:.|.|||.::..:..|:|.|:  ::|.|........:..:|......
Zfish   195 RRQRYLFNISSMEKE-GLLGAELRILRKKHMDSRKATFSEGMAVLRLFTCASGKNAAVLLQARPF 258

  Fly   192 SSQRG--WLEFNLTDTLRYWLHNKGLQRRNELRISIG--------DSQLSTFAAGLVTPQASRTS 246
            .|...  |..|::      |...|..:...:|.:.:.        |.:|      |...:|.|.:
Zfish   259 DSHSASYWEVFDI------WKVFKNFRNTPQLCLELDAVDHGRPLDLRL------LGLSRAGRQT 311

  Fly   247 LEP--FIV-------GYF-------NGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYR 295
            .|.  |:|       |.|       :|.:.....:.|..:|.:  |||    |.|....|:.  .
Zfish   312 KEKAFFVVFGRTKKRGLFYNEIKARSGHDNKTVYEYLFTQRRM--RRA----PLPRGKKPIK--N 368

  Fly   296 PPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPH- 359
            |.|.|.|....|:|||:...:|:|||.::||:.|.|.|:||:.:.:..|||||:||||:...|. 
Zfish   369 PKQRCNRKQLHVNFKEMGWDDWIIAPLEYEAFHCDGVCDFPIRSHLEPTNHAIIQTLMNSMDPRS 433

  Fly   360 LPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            .|..|||||.|..|:||...:.:.:...:|:..|.:.|||
Zfish   434 TPPTCCVPTRLSPISILYIDSANNVVYKQYEDMVVESCGC 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_524863.3 TGFb_propeptide 39..254 CDD:480997 44/247 (18%)
TGF_beta_BMP5_like 299..400 CDD:381639 42/102 (41%)
gdf5XP_002662587.2 None

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