DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and bmp16

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001165247.1 Gene:bmp16 / 100329171 ZFINID:ZDB-GENE-100115-1 Length:416 Species:Danio rerio


Alignment Length:454 Identity:117/454 - (25%)
Similarity:184/454 - (40%) Gaps:100/454 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGDRPRRQAEPNLHNSAS- 65
            |.|..:..|..|:|......:..|.::....:..|:..::.:.:..||    .|:.||....|. 
Zfish     6 LLVLMILLLPQASSGHQEGPSQTHGKLDSLLEPSLAHTIQNLLLTRLG----LQSHPNPSTKAQV 66

  Fly    66 -KFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTF-----SSRLKPEQ 124
             ::||::|.           .|.:....::|...  :...:.:...|::..|     .:...||:
Zfish    67 PQYLLDLYR-----------FHTQQYHLIEDPEF--SYPSKHVQGANTVRCFHHTDSPTPSLPEE 118

  Fly   125 LDNELD-MHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRI-LGS 187
            ....:| :||.||.:.:|.:.|:|.|.||:..:.|   ...:...|:|  |.|....|..| |.|
Zfish   119 QKTTVDGIHIGFNLSSIPSEESVVSAELRLLHEGS---SGGSHVASLY--LSNHDPSSKPILLHS 178

  Fly   188 VNTTSSQRG---WLEF--------NLTDT---LRYWL-------HNKGLQRRNELRISIGDSQLS 231
            ...|..::.   |..|        ||:.|   |.:.|       .:..|.:...||:     :.|
Zfish   179 RQLTRDRKSAQLWETFPLDREVFQNLSKTSGSLSFILDVIPDSNSSSTLPKDRHLRV-----RRS 238

  Fly   232 TFAAGLVTPQASRTSLEPFIVGYFNG--PELLVKIQK----------LRFKRD------------ 272
            |...|   |...|.  .|.:|.|.:.  .|..|.:.|          .|||.|            
Zfish   239 TLQDG---PTWERQ--RPLLVTYSHDGRSEPFVNLNKRKSSRSRSRWTRFKGDRGQGSDWNERRV 298

  Fly   273 -LEKRRAGGGSPPPPPPPPVDLYRPPQS-CERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNF 335
             ...|||            ..|.|..:: |.|....||||::..:.|:|||..::|:||.|.|.|
Zfish   299 KRNNRRA------------AKLKRLSRARCRRHPLYVDFKDVGWNKWIIAPSGYDAFFCLGECRF 351

  Fly   336 PLGTKMNATNHAIVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            ||...||:::||:||||:......:|:||||||.|..|.:|....|:.:.|..||..|.:.|||
Zfish   352 PLADHMNSSSHAMVQTLVSSVNGAVPRPCCVPTALSPIALLFLDQEERVVLKNYQDMVVEGCGC 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 53/244 (22%)
TGFB 300..400 CDD:214556 44/100 (44%)
bmp16NP_001165247.1 TGFb_propeptide 43..256 CDD:279078 53/244 (22%)
TGFB 316..416 CDD:214556 44/100 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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