DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scw and gdf5

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001128589.1 Gene:gdf5 / 100189547 XenbaseID:XB-GENE-481784 Length:496 Species:Xenopus tropicalis


Alignment Length:449 Identity:113/449 - (25%)
Similarity:186/449 - (41%) Gaps:110/449 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGDRPRRQAEPNLHNSASKFLLEVY----- 72
            |:.|..:|.|.|      .:.|...|::|         .||   .|::.:.||..|:.::     
 Frog    95 ASRANPHVKTGN------AENRQSGEKIE---------TPR---PPHVTSKASTKLINIHADSAG 141

  Fly    73 -------NEISEDQEP---KEVLHQRHKRSLDDDILISNEDRQ--------EIASCNSILTFSSR 119
                   |.::|.::.   |..|...|:..|.....:|:.:|:        |....|:|.:|..:
 Frog   142 FKPKRPPNPLTEKEQKDAFKHPLITPHEYMLSLYRTLSDVERKGINGSLKLEAGLANTITSFIDK 206

  Fly   120 LKPEQLDNELDMHITFNTNDVPVDLSLVQAMLRIY-KQPSLVDRRAN-----FTVSVYRKLDNRQ 178
            .:.|::........||:.:.:..| .|:.|.|||. |:|  :|.:.|     :.:.:|....|::
 Frog   207 GQDERMAAARRQKYTFDISALEKD-GLLGAELRILRKRP--IDAKLNSAGKLWQIKLYSCPANKK 268

  Fly   179 D---FSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRI----------SIG---- 226
            .   ...|.|||::|..    |..|::...  |......:|...||.:          |:|    
 Frog   269 SATLLDSRPLGSIDTPK----WEVFDIWKL--YKNFKNSVQLCFELEVLDKGKPADLRSVGFNRT 327

  Fly   227 DSQLSTFAAGLVTPQASRTSLEPFIVGYFNGPELLVKIQKLRFKRD-----------LEKRRAGG 280
            ..|.:..|..||..:..:..|      :||  |:     |.|..:|           ..||||  
 Frog   328 GRQTNEKAIFLVFGRTKKRDL------FFN--EI-----KARSGQDDKTVYEYLFNQRRKRRA-- 377

  Fly   281 GSPPPPPPPPVDLYRPPQS----CERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKM 341
                  |.......||.::    |.:....|:||::...:|:|||.::|||.|.|.|.|||.:.:
 Frog   378 ------PLSTRQGKRPNKNSKARCSKKPLHVNFKDMGWDDWIIAPLEYEAYHCEGLCEFPLRSHL 436

  Fly   342 NATNHAIVQTLMHLKQPH-LPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399
            ..||||::||||:...|. .|..|||||.|..|:||...:.:.:...:|:..|.:.|||
 Frog   437 EPTNHAVIQTLMNSMDPETTPPTCCVPTRLSPISILYTDSANNVVYKQYEDMVVESCGC 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 52/260 (20%)
TGFB 300..400 CDD:214556 41/101 (41%)
gdf5NP_001128589.1 TGFb_propeptide 142..328 CDD:279078 40/194 (21%)
TGFB 395..496 CDD:214556 41/101 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.