DRSC/TRiP Functional Genomics Resources

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Protein Alignment scw and bmp6

DIOPT Version :9

Sequence 1:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001106378.1 Gene:bmp6 / 100127176 XenbaseID:XB-GENE-479134 Length:441 Species:Xenopus tropicalis


Alignment Length:404 Identity:131/404 - (32%)
Similarity:202/404 - (50%) Gaps:41/404 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 YQKRPLSEQMEMIDILDLGDRPR--------RQAEPNLHNSASKFLLEVYNEIS--------EDQ 79
            ::||.:  |.|::.||.|..|||        :..:|...|||..|:|::||.:|        :|.
 Frog    45 HEKREM--QKEILSILGLPHRPRPIHGLSPSQLNQPGKLNSAPLFMLDLYNAMSGQDQGMDLKDW 107

  Fly    80 EPKEVL--HQRHKRSLDDDILISNEDRQEIASCNSILTFSSRLKPEQ-LDNELDMH--ITFNTND 139
            ..:..|  ||...:||....|.|.:|...::..:.:::|.:.::.:: |...|..|  ..||.:.
 Frog   108 SHRATLHSHQLKVKSLLGSHLGSAQDSAFLSDADMVMSFVNLVEHDKDLSPRLWHHKEYKFNLSQ 172

  Fly   140 VPVDLSLVQAMLRIYKQPSLVD-RRANFTVSVYRKL---DNRQDFSYRILGSVNTTSSQRGWLEF 200
            :|...::..|..||||...|.. ....|.:|:|:.|   .||:...: :|.:....:|..|||||
 Frog   173 IPEGEAVTAAEFRIYKDCVLGSFENQTFLISIYQVLAEHRNRETNIF-LLDTQTVWASDEGWLEF 236

  Fly   201 NLTDTLRYWL----HNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIVGYFNGPEL- 260
            ::|.|...|:    ||.|||.|.|.|   ....::..|||||........ :||:|.:|...|: 
 Frog   237 DITATSNLWVMNPRHNFGLQLRVETR---DGRNINAKAAGLVGRDGPYDK-QPFMVAFFKASEVH 297

  Fly   261 LVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQ---SCERLNFTVDFKELHMHNWVIAPK 322
            |...:....||..:.|.....:........:..|...:   :|.:....|.|::|...:|:||||
 Frog   298 LRTTRSATSKRKNQNRNRYTQAQDVSRVSSITDYNSSELKTACRKHELYVSFQDLGWQDWIIAPK 362

  Fly   323 KFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQP-HLPKPCCVPTVLGAITILRYLNEDIIDL 386
            .:.|.:|||.|:|||...||||||||||||:||..| ::|||||.||.|.||::|.:.:...:.|
 Frog   363 GYAANYCGGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVIL 427

  Fly   387 TKYQKAVAKECGCH 400
            .||:..|.:.||||
 Frog   428 KKYRNMVVRACGCH 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 71/243 (29%)
TGFB 300..400 CDD:214556 49/100 (49%)
bmp6NP_001106378.1 TGFb_propeptide 32..290 CDD:366248 73/251 (29%)
TGF_beta_BMP6 339..441 CDD:381666 49/101 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1063560at2759
OrthoFinder 1 1.000 - - FOG0000576
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.020

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