DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and SWI1

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:NP_015309.1 Gene:SWI1 / 856091 SGDID:S000005937 Length:1314 Species:Saccharomyces cerevisiae


Alignment Length:465 Identity:99/465 - (21%)
Similarity:154/465 - (33%) Gaps:140/465 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 HNSVAFGHVTSSPSGGNGSSYNGGTTPTN----------SSNSNATTNGGGTAGPGGTGGSG--- 216
            :|:......|::.:..|.::.|....|.|          |||:|..||...|    .||.||   
Yeast    12 NNNTTTTTTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNNNNT----NTGASGVDD 72

  Fly   217 --------------------GGGGGGGGGGGGVGGHQFSFASPTAAPSGKEARHFAANSASNSST 261
                                ..................:|.||||..:         |:|..:.|
Yeast    73 FQNFFDPKPFDQNLDSNNNNSNSNNNDNNNSNTVASSTNFTSPTAVVN---------NAAPANVT 128

  Fly   262 SSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLD 326
            ..:|:|..|        .|..|....|:.|:.                 .|.:|.|...|     
Yeast   129 GGKAANFIQ--------NQSPQFNSPYDSNNS-----------------NTNLNSLSPQA----- 163

  Fly   327 LYELYNLVIARGGLVDVINKKL--WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLST 389
                   ::|:..::|..|..|  .|::..|.:..:|...|...:.|.:  ::...:...:|.|:
Yeast   164 -------ILAKNSIIDSSNLPLQAQQQLYGGNNNNNSTGIANDNVITPH--FITNVQSISQNSSS 219

  Fly   390 ------------------PAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPSLPG----- 431
                              |....|:.:||....:..|  .|.|.::....:..|...:|.     
Yeast   220 STPNTNSNSTPNANQQFLPFNNSASNNGNLTSNQLIS--NYAASNSMDRSSSASNEFVPNTSDNN 282

  Fly   432 ------GMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEY 490
                  .|:..|      :...:||....|..||..|:.....:.|     |.|..| .:.|...
Yeast   283 NNSNNHNMRNNS------NNKTSNNNNVTAVPAATPANTNNSTSNA-----NTVFSE-RAAMFAA 335

  Fly   491 LQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSPDL-S 554
            ||..|.::.|.:         .|||..||.||||:...||||||.|....||.|||:.|...| |
Yeast   336 LQQKQQQRFQAL---------QQQQQQQQNQQQQNQQPQQQQQQQQNPKFLQSQRQQQQRSILQS 391

  Fly   555 KHEALSAQVA 564
            .:.||..:::
Yeast   392 LNPALQEKIS 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 13/93 (14%)
SWI1NP_015309.1 ARID_Swi1p-like 407..490 CDD:350635
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.930

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