DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and SWI1

DIOPT Version :10

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:NP_015309.1 Gene:SWI1 / 856091 SGDID:S000005937 Length:1314 Species:Saccharomyces cerevisiae


Alignment Length:465 Identity:99/465 - (21%)
Similarity:154/465 - (33%) Gaps:140/465 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 HNSVAFGHVTSSPSGGNGSSYNGGTTPTN----------SSNSNATTNGGGTAGPGGTGGSG--- 216
            :|:......|::.:..|.::.|....|.|          |||:|..||...|    .||.||   
Yeast    12 NNNTTTTTTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNNNNT----NTGASGVDD 72

  Fly   217 --------------------GGGGGGGGGGGGVGGHQFSFASPTAAPSGKEARHFAANSASNSST 261
                                ..................:|.||||..:         |:|..:.|
Yeast    73 FQNFFDPKPFDQNLDSNNNNSNSNNNDNNNSNTVASSTNFTSPTAVVN---------NAAPANVT 128

  Fly   262 SSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLD 326
            ..:|:|..|        .|..|....|:.|:.                 .|.:|.|...|     
Yeast   129 GGKAANFIQ--------NQSPQFNSPYDSNNS-----------------NTNLNSLSPQA----- 163

  Fly   327 LYELYNLVIARGGLVDVINKKL--WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLST 389
                   ::|:..::|..|..|  .|::..|.:..:|...|...:.|.:  ::...:...:|.|:
Yeast   164 -------ILAKNSIIDSSNLPLQAQQQLYGGNNNNNSTGIANDNVITPH--FITNVQSISQNSSS 219

  Fly   390 ------------------PAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPSLPG----- 431
                              |....|:.:||....:..|  .|.|.::....:..|...:|.     
Yeast   220 STPNTNSNSTPNANQQFLPFNNSASNNGNLTSNQLIS--NYAASNSMDRSSSASNEFVPNTSDNN 282

  Fly   432 ------GMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEY 490
                  .|:..|      :...:||....|..||..|:.....:.|     |.|..| .:.|...
Yeast   283 NNSNNHNMRNNS------NNKTSNNNNVTAVPAATPANTNNSTSNA-----NTVFSE-RAAMFAA 335

  Fly   491 LQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSPDL-S 554
            ||..|.::.|.:         .|||..||.||||:...||||||.|....||.|||:.|...| |
Yeast   336 LQQKQQQRFQAL---------QQQQQQQQNQQQQNQQPQQQQQQQQNPKFLQSQRQQQQRSILQS 391

  Fly   555 KHEALSAQVA 564
            .:.||..:::
Yeast   392 LNPALQEKIS 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 ARID_Dri-like 277..401 CDD:350645 22/143 (15%)
SWI1NP_015309.1 ARID_Swi1p-like 407..490 CDD:350635
PKK 618..>654 CDD:463600
Blue background indicates that the domain is not in the aligned region.

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