Sequence 1: | NP_788434.1 | Gene: | retn / 45976 | FlyBaseID: | FBgn0004795 | Length: | 911 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_008769986.1 | Gene: | Arid4b / 84481 | RGDID: | 619919 | Length: | 1319 | Species: | Rattus norvegicus |
Alignment Length: | 838 | Identity: | 161/838 - (19%) |
---|---|---|---|
Similarity: | 277/838 - (33%) | Gaps: | 270/838 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 247 EARHFAAN---SASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKE-FLDDLFSFM 307
Fly 308 QKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 372
Fly 373 YMKYLYPYE-------------------------CEKKNLSTPAELQAAIDGNRREGRRSSYGQY 412
Fly 413 EAMHNQMPM--TPIS---------RPSLPG--GMQQMSPLALVTHAAVANNQQAQAAAAAAAAHH 464
Fly 465 RLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQ 529
Fly 530 QQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGS------AHTSPQQREA 588
Fly 589 LNLSDS---------------------------------PPNLTNIK-REREREPTPEPVDQDDK 619
Fly 620 FVDQPPPAKRVGSGLLPPGFPANFYLNPH-NMAAVAAAAGFHHPSMGHQQD----------AASE 673
Fly 674 GEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNGHHHHQTHHL----DKSDDSAIEN---------S 725
Fly 726 PTTSTT----------TGGSVGHRHSSPVSTKKKG--------GAKPQS---------------- 756
Fly 757 ---GGKDVPT-----------------EDKDASSSGKLNP-------------LETLSLLSGMQF 788
Fly 789 QVA--RNGTGDNGEPQLIVNLELNGVKYSGVLVANVP-------LSQSETR-TSSPCHAEAP--- 840
Fly 841 TVEEEKDEEEEEEPKAAEEESHR--------SPVKQENEDV-DQDME----GSEVLLN 885 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
retn | NP_788434.1 | BRIGHT | 294..386 | CDD:128777 | 33/117 (28%) |
Arid4b | XP_008769986.1 | TUDOR | 58..113 | CDD:197660 | |
RBB1NT | 169..262 | CDD:285392 | 1/4 (25%) | ||
ARID | 311..394 | CDD:198082 | 28/82 (34%) | ||
Tudor-knot | 571..624 | CDD:288553 | 5/52 (10%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2744 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |