DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and Arid4b

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:XP_008769986.1 Gene:Arid4b / 84481 RGDID:619919 Length:1319 Species:Rattus norvegicus


Alignment Length:838 Identity:161/838 - (19%)
Similarity:277/838 - (33%) Gaps:270/838 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 EARHFAAN---SASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKE-FLDDLFSFM 307
            ::|...||   .....|:||||....::.:. ..|::.....:..||...|:.:| ||..|:.||
  Rat   257 KSRTIPANWKTELKEDSSSSEAEEEEEEEDD-EKEKEDNSSEEEEEIEPFPEERENFLQQLYKFM 320

  Fly   308 QKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 372
            :.||||||:.|::....|:|::|:.||...||..::.:..:|:::.:.|.:|...::|.:.::..
  Rat   321 EDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCA 385

  Fly   373 YMKYLYPYE-------------------------CEKKNLSTPAELQAAIDGNRREGRRSSYGQY 412
            |.||||.:|                         ||.|.:....|..|.|.....|..:      
  Rat   386 YKKYLYGFEEYCRSANIDFQMALPEKVLNKPCKDCENKEIKVKEESDAEIKEVNVEDSK------ 444

  Fly   413 EAMHNQMPM--TPIS---------RPSLPG--GMQQMSPLALVTHAAVANNQQAQAAAAAAAAHH 464
                |.:|.  ||..         :|||..  |:.:..|         |.:.|.:.|        
  Rat   445 ----NMIPKEETPAEDESERKENIKPSLGSKKGLLECIP---------AQSDQEKEA-------- 488

  Fly   465 RLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQ 529
                        |:.|.| |...:|......|:.|:.:           ......:::|.....:
  Rat   489 ------------NITKLE-EKESLEDKDGATARAEEAL-----------STEVDAEEEQARSGDE 529

  Fly   530 QQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGS------AHTSPQQREA 588
            ..:::.:....::::.:..:..|..:.:..:.:...:..|     |||.      .....|:...
  Rat   530 TNKEEDEDDEEIEEEEEEDEEEDEDEDDDDNNEEEEFECY-----PPGMKVQVRYGRGKNQKMYE 589

  Fly   589 LNLSDS---------------------------------PPNLTNIK-REREREPTPEPVDQDDK 619
            .::.||                                 ..|:..|| |::.:....:..|:|:|
  Rat   590 ASIKDSDVEGGEVLYLVHYCGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKEKDRDEK 654

  Fly   620 FVDQPPPAKRVGSGLLPPGFPANFYLNPH-NMAAVAAAAGFHHPSMGHQQD----------AASE 673
            :..:....:|:..        :.|..||. .|.:....|...:...||.:.          .|||
  Rat   655 YSPKNCKLRRLSK--------SPFQSNPSPEMVSKLDLADAKNSDTGHIKSIEITSILNGLQASE 711

  Fly   674 GEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNGHHHHQTHHL----DKSDDSAIEN---------S 725
            ...||.....|.......||..|:|:.:    |..|....|    :.|..|.:|.         :
  Rat   712 SSAEDSEQEEERCAQDPESSSKDESKVE----HSAHSRSELISKEELSSPSLLEENKVHPDLVIA 772

  Fly   726 PTTSTT----------TGGSVGHRHSSPVSTKKKG--------GAKPQS---------------- 756
            .|.|.:          ............::.|:|.        ..|||:                
  Rat   773 KTVSKSPERLRKDVEAISEDTDFEEEDEITKKRKDVKKDTTDKALKPQTKRGKRRYCNTDECLQS 837

  Fly   757 ---GGKDVPT-----------------EDKDASSSGKLNP-------------LETLSLLSGMQF 788
               |.|:..|                 ||::..|..|:.|             |.|.|..||.. 
  Rat   838 GSPGKKEDRTKSKEPLCTGNSSNSSSDEDEEEKSKAKMTPTKKYNGLEEKRKSLRTTSFYSGFS- 901

  Fly   789 QVA--RNGTGDNGEPQLIVNLELNGVKYSGVLVANVP-------LSQSETR-TSSPCHAEAP--- 840
            :||  |....:|.:.:|..|...:.......:....|       .|.|:|. .:||.|| ||   
  Rat   902 EVAEKRIKLLNNSDERLQNNRAKDRKDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHA-APDEG 965

  Fly   841 TVEEEKDEEEEEEPKAAEEESHR--------SPVKQENEDV-DQDME----GSEVLLN 885
            ||||......|||..:...|..:        .||:::..:| |:..|    ||..:||
  Rat   966 TVEESLQTVAEEESCSPNMELEKPLPTSVDSKPVEEKPLEVSDRKTEFPSSGSNSVLN 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 33/117 (28%)
Arid4bXP_008769986.1 TUDOR 58..113 CDD:197660
RBB1NT 169..262 CDD:285392 1/4 (25%)
ARID 311..394 CDD:198082 28/82 (34%)
Tudor-knot 571..624 CDD:288553 5/52 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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