DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment retn and AT1G55650

DIOPT Version :9

Sequence 1:	NP_788434.1	Gene:	retn / 45976	FlyBaseID:	FBgn0004795	Length:	911	Species:	Drosophila melanogaster
Sequence 2:	NP_175961.1	Gene:	AT1G55650 / 842014	AraportID:	AT1G55650	Length:	337	Species:	Arabidopsis thaliana

Alignment Length:	205	Identity:	52/205 - (25%)
Similarity:	90/205 - (43%)	Gaps:	46/205 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   255 SASNSSTSSEASNSSQQ--NNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRL 317
            ||.::..||..|...|.  .|...|   ::.:|..:|.:|    |:|                ::
plant    16 SALDNDVSSHMSMLYQDIVRNPELF---WEMLRDFHESSD----KKF----------------KI 57

  Fly   318 PIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 382
            ||:....|||:.|:|.|.:||||..||..:..:|:|...:..::||::||.||..|:|.|:.:|.
plant    58 PIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRCKEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEH 122

  Fly   383 -------------EKKNLSTPAELQAAIDGNRREGRRSSY------GQYEAMHNQMPMTPISRPS 428
                         ::|.|....|..|..|.:.:|.:..:.      |::|:  ..:..|.:....
plant   123 LYYFQAPLSTFWEKEKALKLLIEKSANRDKDSQELKPGTVITGIIDGKFES--GYLISTKVGSEK 185

  Fly   429 LPGGMQQMSP 438
            |.|.:..:||
plant   186 LKGMLYHISP 195

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
retn	NP_788434.1	BRIGHT	294..386	CDD:128777	28/104 (27%)
AT1G55650	NP_175961.1	BRIGHT	35..126	CDD:128777	33/113 (29%)
AT1G55650	NP_175961.1	HMGB-UBF_HMG-box	215..278	CDD:238686
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	58	1.000	Domainoid score	I3936
eggNOG	1	0.900	-	-		E1_KOG2744
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001099
OrthoInspector	1	1.000	-	-		otm2864
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.810