DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment retn and AT3G13350

DIOPT Version :9

Sequence 1:	NP_788434.1	Gene:	retn / 45976	FlyBaseID:	FBgn0004795	Length:	911	Species:	Drosophila melanogaster
Sequence 2:	NP_566454.1	Gene:	AT3G13350 / 820535	AraportID:	AT3G13350	Length:	319	Species:	Arabidopsis thaliana

Alignment Length:	197	Identity:	48/197 - (24%)
Similarity:	83/197 - (42%)	Gaps:	48/197 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   292 DDPKRKE--FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIK 354
            ||..|..  |.:.|.:|:......: ::|.:..:.|||:.|:..|.:|||:..|:..:.|:|:|.
plant    37 DDLVRNSALFWEKLRAFLGLTSKTL-KVPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKEVIG 100

  Fly   355 GLHLPSSITSAAFTLRTQYMKYLYP----YECEK------------KNLSTPA------------ 391
            ....|::||||:|.||..|:|:|:.    |..||            |:|:..:
plant   101 AFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEKPVSSLQSTDEALKSLANESPNPEEGIDEPQV 165

  Fly   392 --ELQAAIDGNRREG----RRSSYGQYEAMHNQMPMTPISRPSLPGGMQQMSPLALVTHAAVANN 450
              |:|..|||....|    .:....:.:.:...:|.||           ..|...:.|.:|:..:
plant   166 GYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTP-----------SQSQQTMETPSAIVQS 219

  Fly   451 QQ 452
            .|
plant   220 SQ 221

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
retn	NP_788434.1	BRIGHT	294..386	CDD:128777	31/109 (28%)
AT3G13350	NP_566454.1	ARID_HMGB9-like	42..127	CDD:350636	27/85 (32%)
AT3G13350	NP_566454.1	HMGB-UBF_HMG-box	238..301	CDD:238686
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	58	1.000	Domainoid score	I3936
eggNOG	1	0.900	-	-		E1_KOG2744
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001099
OrthoInspector	1	1.000	-	-		otm2864
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.810