DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment retn and Arid5b

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:XP_006514192.1 Gene:Arid5b / 71371 MGIID:2175912 Length:1214 Species:Mus musculus


Alignment Length:880 Identity:159/880 - (18%)
Similarity:265/880 - (30%) Gaps:352/880 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 EARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKE--FLDDLFSFMQK 309
            |||.......:|.:...:.||          ||:.|     ..|.::.:..|  ||..|:.:|::
Mouse   312 EARSALTKPKNNHNNCKKTSN----------EEKPK-----LSIGEECRADEQAFLVALYKYMKE 361

  Fly   310 RGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYM 374
            |.|||.|:|.:....::|:.::......||...:..::.|:.|...|......||||...|..|.
Mouse   362 RKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYE 426

  Fly   375 KYLYPYE----------------CEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPM-- 421
            :.:.|||                .:::|.:...|.:..:.||:|..:..:..:.|..:...|.  
Mouse   427 RLILPYERFIKGEEDKPLPPIKPRKQENNTQENENKTKVSGNKRIKQEMAKNKKEKENTPKPQDT 491

  Fly   422 -----------------------------------------TPISR------------------- 426
                                                     .|:||                   
Mouse   492 SEVSSEQRKEEETLNHKSAPEPLPAPEVKGKPEGHKDLGARAPVSRADPEKANETDQGSNSEKEA 556

  Fly   427 ------------PS-----------LPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMG 468
                        ||           .||..:|  |||..: ..:.:.|:|:......:....|.|
Mouse   557 EEMGDKGLAPLLPSPPLPPEKDSAPTPGAGKQ--PLASPS-TQMDSKQEAKPCCFTESPEKDLQG 618

  Fly   469 AP----------------------------------------------AFGQMPN-LVKQEI--- 483
            ||                                              |..|.|. ||.|..   
Mouse   619 APFSSFSATKPPLTSQNEAEEEQLPATANYIANCTVKVDQLGSDDIHTALKQTPKVLVVQSFDMF 683

  Fly   484 ----------ESRMMEYLQLIQAKKEQG-MPPV-------------LGGNHPHQQQHSQQQQQQ- 523
                      |:..:.|..|:.::...| |.|:             |..::|:........::: 
Mouse   684 KDKDLTGPMNENHGLNYTPLLYSRGNPGIMSPLAKKKLLSQVSGASLSSSYPYGSPPPLISKKKL 748

  Fly   524 -----------QHHHQQQQQQQSQQQ----HHLQQ-----QRQRSQSPDLSKHEALSAQVALWHM 568
                       |.||.|.....:..:    .|:|.     ...|....|:.||:.||.       
Mouse   749 IAREDLCSGLSQGHHSQSSDHTAVSRPSVIQHVQSFKNKASEDRKSINDIFKHDKLSR------- 806

  Fly   569 YHNNNSPPGSAHTSPQQREAL-NLSDSPPNLTNIKREREREPTPEPVDQDDKFVDQPPPAKRVGS 632
                    ..||.....:..| :|:||    ..:|:|.:        :..||.::     ||..|
Mouse   807 --------SDAHRCGFSKHQLGSLADS----YILKQETQ--------EGKDKLLE-----KRAVS 846

  Fly   633 GLLPPGFPANFYLNPHNMAAVAAAAGFHHPSMGHQQDAASEGEPEDDYAHGEHNTTGNSSSMH-- 695
            ....|.|.|:||.:||          .|  |:               |.|.||:.....||.:  
Mouse   847 HAHVPSFLADFYSSPH----------LH--SL---------------YRHTEHHLHNEQSSKYAA 884

  Fly   696 DDSEPQQMNG----HHHHQTHHL---------DK---SDDSAIENSPTTST-------TTGGSVG 737
            .|:..:..||    |.|.:..|:         ||   :.:::.::.||..:       .|...:|
Mouse   885 RDAYQESENGAFLSHKHPEKIHVNYLASLHLQDKKVAAAEASTDDQPTDLSLPKNPHKLTSKVLG 949

  Fly   738 HRHSSPVSTKKKGGAKPQ---------------------SGGKDVPTEDKDASSSGKLNP--LET 779
            ..||:..|.:.||.::.|                     ||.|..|   :..:.|||.:.  ||.
Mouse   950 LAHSTSGSQEIKGASQFQVVSNQSRDCHPKACRVSPMTMSGPKKYP---ESLARSGKPHQVRLEN 1011

  Fly   780 LSLLSGMQFQVARNGTGDNGEPQLI-----VNLELNGVKYSGVLVANVPLSQSETRTSSPCHAEA 839
            ...:.||...:...    ...||.|     :...|..:        ::.::..:.|..||.....
Mouse  1012 FRKMEGMVHPILHR----KMSPQNIGAARPIKRSLEDL--------DLVIAGKKARAVSPLDPAK 1064

  Fly   840 PTVEEEKDEEEEEE--------PKAAEEESHRSPV 866
            ....:||..|:|.|        ...|..|.|:.|:
Mouse  1065 EASGKEKASEQESEGNKGAYGGHSGAASEGHKLPL 1099

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 26/109 (24%)
Arid5bXP_006514192.1 PTZ00121 <437..>562 CDD:173412 10/124 (8%)
ARID_ARID5B 347..441 CDD:350649 26/93 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.