DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and arid3b

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:XP_005163185.1 Gene:arid3b / 571249 ZFINID:ZDB-GENE-070209-182 Length:616 Species:Danio rerio


Alignment Length:532 Identity:179/532 - (33%)
Similarity:244/532 - (45%) Gaps:107/532 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 QLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKL------KMQVRDMKVGLMEQDYAAAAHAAA 147
            |:|.....::|.|........|...::...|:|:|      |:::...:..|.|.....|...||
Zfish    11 QVPSLSQDSSLASAFSQAAFASSAGVKLEAVMEQLQRQQQAKLEMERKERHLREAHILYAQQLAA 75

  Fly   148 FGANMLPTTISSGFPLPHNSVAFGHVTSSPSGGNGSSYNGGTTPTNSSNSNATTNGGGTAGPGGT 212
            ..| ::.:..:.|.||..:..:......:..||.|.....|  |..:::..|...........|.
Zfish    76 QQA-IMASARAQGAPLTPDFYSKNSRDRALKGGQGPLAARG--PVKTASDLAHEEDAADEMDRGR 137

  Fly   213 GGSG----------GGGGGGGGGGGG---------------VGGHQFSFASPTAAPSGKEARHFA 252
            |..|          |..|.......|               ||...:||...||:||..:.|  .
Zfish   138 GSEGDEDDDDEMMDGEDGSEEEESEGLEFLRKQSLALQQAAVGVPPYSFPVYTASPSAAKKR--P 200

  Fly   253 ANSASNSSTSSEASNSSQQN----NG---WSFEEQFKQ----------------------VRQLY 288
            .:..:......|.|.|.||:    ||   |:.::.|||                      ..:||
Zfish   201 LSPTTKVKDEPEDSLSDQQSFNTPNGMGDWNLDDSFKQNGNSSWNEEGDGGRSRGEASRDFAKLY 265

  Fly   289 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEII 353
            |:::||||||||||||::|||||||:||:|||||.|||||.||.||..:||||:|||||:|:||.
Zfish   266 ELDNDPKRKEFLDDLFAYMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREIT 330

  Fly   354 KGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQ--YE--- 413
            |||:||:|||||||||||||||||||||||||.||:|.|||||||.|||||||..|..  |.   
Zfish   331 KGLNLPTSITSAAFTLRTQYMKYLYPYECEKKGLSSPGELQAAIDSNRREGRRPGYSNSLYRFSP 395

  Fly   414 -------------------AMHNQMPMTP---ISRPSLP-GGMQQMSPLALVTHAAVANNQQAQA 455
                               ..||::..||   :.:.::| .....|.|..|....|:.:.||...
Zfish   396 SPSGAAPHLLSPPKMHLPATGHNELQATPSPALKKATVPEDSPASMLPARLPLALALGHQQQLAR 460

  Fly   456 AAAAAAAHHRL---MGAPAFGQMPNLVK---------QEIESRMME--YLQLIQAKKEQGMPPVL 506
            ||.......||   |||.|....|.:|:         .|.:.|:::  :.|.:.|...|..|..|
Zfish   461 AATLEQLRERLETGMGAGAVNAGPAVVEGPERKMARLAEEQQRLLQQAFQQNLLAMASQVNPTNL 525

  Fly   507 GGNHPHQQQHSQ 518
            ..|:.:.::..|
Zfish   526 RMNNANTREEKQ 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 75/91 (82%)
arid3bXP_005163185.1 BRIGHT 271..363 CDD:128777 75/91 (82%)
DUF4251 <523..566 CDD:290766 3/15 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592201
Domainoid 1 1.000 153 1.000 Domainoid score I4247
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 251 1.000 Inparanoid score I3210
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001099
OrthoInspector 1 1.000 - - otm26340
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15348
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.110

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