Protein Alignment retn and arid3c

DIOPT Version :10

• Sequence 1: NP_788434.1
• Gene: retn / 45976
• FlyBaseID: FBgn0004795
• Length: 911
• Species: Drosophila melanogaster
• Sequence 2: XP_005165415.1
• Gene: arid3c / 569444
• ZFINID: ZDB-GENE-060526-12
• Length: 599
• Species: Danio rerio
• Alignment Length: 789
• Identity: 224/789 - (28%)
• Similarity: 303/789 - (38%)
• Gaps: 300/789 - (38%)

  Fly    48 EHHQLSAKAAIAARLS--------------HTVSGGGGSFASPEPQTELPLSHHHQLPPNHPLNA 98
            ::..::.|:|:.|..|              |..|||||..                     .|.|
Zfish     3 DNTSIATKSALQAAFSSASSLPLLVSSPGAHGQSGGGGGM---------------------KLEA 46

  Fly    99 LGSFMGIGGLHSIPNLQHSDVL-----EKLKM-----QVRDMKVGLMEQDYAA-----AAHAAAF 148
            :           :.|||.....     |||:.     .:|.|....::|...|     ||...||
Zfish    47 V-----------MENLQRQQAARLALEEKLRQAEKEKDIRSMVESQIQQQALAFRHYQAAVRGAF 100

  Fly   149 GANMLPTTISSGFPLPHNSVAFGHVTSSPSGGNGSSYNGG--TTPTNSSNSNATTNGGG---TAG 208
            .|. :|.: |||.||...  |...:.......:....:.|  ....:....::...|||   ..|
Zfish   101 AAG-VPNS-SSGHPLERR--AESDIDDEDDEDDDPELDRGMDDEERDMDEDDSMNEGGGDEDLEG 161

  Fly   209 P-----------GGTGGSGGGGGGGGGGGGGVGGHQFSFASPTAAP---SGKEARHFAANSASNS 259
            |           .|.|                       .||.:.|   |..:..:.|...|  .
Zfish   162 PLAHYPPRHAVYPGAG-----------------------QSPKSTPIHLSRVQPPYPAPRQA--E 201

  Fly   260 STSSEASNSSQQNNGWSFEEQFKQ--------------------------VRQLYEINDDPKRKE 298
            |.|:.|..:..|::.|::||||||                          :::|||::||.||||
Zfish   202 SPSALAPQAQSQHHEWTYEEQFKQSGQGSGPGRKLKDSSVAFGGGGSSSLIQELYELDDDEKRKE 266

  Fly   299 FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSIT 363
            |||||||||||||||:||:|||||.|||||.||.||..:||||:|||||:|:||.|||:||:|||
Zfish   267 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSIT 331

  Fly   364 SAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPM-TP---- 423
            |||||||||||||||||||||:.||:|.|||||||.|||||||.|||  ..:.|..|: ||
Zfish   332 SAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG--STLFNYSPVGTPTLLA 394

  Fly   424 --------ISRPSLPGGMQQMS--------------------PLALVTHAAVANNQQAQAAAAAA 460
                    ||.|:..||....:                    |::|..|.:.|  |.|.|||..|
Zfish   395 SPKLQMPHISMPTPNGGHMTQTPGIKKEDSMLSSCLTNRVGIPMSLAGHHSAA--QAAAAAAVQA 457

  Fly   461 AAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQH 525
            ||                            |:.::.|.|.|.||                  ::.
Zfish   458 AA----------------------------LEQLREKLESGEPP------------------EKK 476

  Fly   526 HHQQQQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALN 590
            .....::||...||.|||..           .|::.|:.:....:|.:.         :|..|||
Zfish   477 VMLMAEEQQRIMQHALQQNL-----------FAMATQLPMNIKLNNRDD---------RQETALN 521

  Fly   591 LSDSPPNLTNIKREREREPTPEPVDQDDKFVDQPPPAKRVGSGLLPPGFPANFYLNPHNMAAVAA 655
            ||.:..:..|:..|.                          :|::..|.          :.|...
Zfish   522 LSTNGISSINMSIEI--------------------------NGVVYTGV----------LFARKP 550

  Fly   656 AAGFHHPSMGHQQDAASEGEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNGHHHHQTHHLDKSDDS 720
            |.||               .|.....|.:|::.|.|:|....|..|..:           .:..|
Zfish   551 AIGF---------------MPSSQRVHHQHSSQGKSNSPGLSSHIQPSS-----------SASSS 589

  Fly   721 AIENSPTTS 729
            |..:.|.||
Zfish   590 ASSHGPATS 598

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
retn	NP_788434.1	ARID_Dri-like	277..401	CDD:350645	97/149 (65%)
arid3c	XP_005165415.1	ARID_ARID3	253..369	CDD:350631	91/115 (79%)